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SCNpilot_expt_1000_bf_scaffold_6741_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6741_curated_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(128..2056)
DNA (1929bp) protein (643aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
ATP-dependent metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV07_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_6741_curated_2

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comp(2185..2994)
DNA (810bp) protein (270aa)
Putative PP-loop superfamily ATPase n=1 Tax=uncultured organism RepID=Q1EI29_9ZZZZ
Putative PP-loop superfamily ATPase {ECO:0000313|EMBL:CAK32581.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
SCNpilot_expt_1000_bf_scaffold_6741_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3259..3618)
DNA (360bp) protein (120aa)
Tol-Pal system YbgF {ECO:0000313|EMBL:GAK46556.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Uncharacterized protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MF61_9PROT
tol-pal system protein YbgF
SCNpilot_expt_1000_bf_scaffold_6741_curated_4
unknown

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3890..4294
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6741_curated_5
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4428..4949)
DNA (522bp) protein (174aa)
peptidoglycan-associated lipoprotein n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B6B5E1
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:ENZ83110.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
OmpA family protein; K03640 peptidoglycan-associated lipoprotein
SCNpilot_expt_1000_bf_scaffold_6741_curated_6
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5134..5781)
DNA (648bp) protein (216aa)
Protein TolB n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVZ4_9PROT rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
tolB; translocation protein TolB; K03641 TolB protein rbh
SCNpilot_expt_1000_bf_scaffold_6741_curated_7
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(6459..7307)
DNA (849bp) protein (283aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF23294.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039E0252
SCNpilot_expt_1000_bf_scaffold_6741_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7276..7728)
DNA (453bp) protein (151aa)
biopolymer transporter ExbD n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A3B9B7
biopolymer transport TolR; K03560 biopolymer transport protein TolR
Biopolymer transport TolR {ECO:0000313|EMBL:ABS63734.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6741_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7728..8612)
DNA (885bp) protein (295aa)
biopolymer transporter ExbB n=1 Tax=Xanthobacteraceae RepID=UPI00036D2575
MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:CDO58907.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
protein TolQ; K03562 biopolymer transport protein TolQ
SCNpilot_expt_1000_bf_scaffold_6741_curated_10
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8683..9162)
DNA (480bp) protein (160aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Caulobacter crescentus OR37 RepID=R0D3Y0_CAUCE
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
SCNpilot_expt_1000_bf_scaffold_6741_curated_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9159..9662)
DNA (504bp) protein (168aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
phosphinothricin acetyltransferase n=1 Tax=Herbaspirillum seropedicae RepID=UPI000310E70B
pat; phosphinothricin N-acetyltransferase (EC:2.3.1.-); K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
SCNpilot_expt_1000_bf_scaffold_6741_curated_12
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9655..10173)
DNA (519bp) protein (173aa)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3A6S0_9PROT
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
SCNpilot_expt_1000_bf_scaffold_6741_curated_13
unknown

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10373..10540
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6741_curated_14
unknown

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11005..11100
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6741_curated_15
unknown

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11409..11633
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 15 items

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