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SCNpilot_expt_1000_bf_scaffold_7750_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7750_curated_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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2..796
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003700228
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84051.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_2
unknown

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comp(766..2151)
DNA (1386bp) protein (462aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7750_curated_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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2266..2679
DNA (414bp) protein (138aa)
quinoprotein glucose dehydrogenase (EC:1.1.5.2); K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Quinoprotein glucose dehydrogenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028C8_SOLUE
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:ABJ82629.1}; EC=1.1.5.2 {ECO:0000313|EMBL:ABJ82629.1};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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2828..3112
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037A3014
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein; K02237 competence protein ComEA
SCNpilot_expt_1000_bf_scaffold_7750_curated_5
Aliiglaciecola lipolytica, Aliiglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3192..4046
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00030611EB rbh
Ureidoglycolate lyase {ECO:0000313|EMBL:GAC16897.1}; TaxID=1127673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Aliiglaciecola.;" source="Aliiglaciecola lipolytica E3.;"
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase rbh
SCNpilot_expt_1000_bf_scaffold_7750_curated_6
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4314..5192)
DNA (879bp) protein (293aa)
Dihydroxy-acid dehydratase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3J1_9PROT rbh
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EGX99914.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
SCNpilot_expt_1000_bf_scaffold_7750_curated_7
unknown

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5576..5734
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7750_curated_8
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6133..6351)
DNA (219bp) protein (73aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EYD77235.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYD77235.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003821339
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_7750_curated_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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8778..9236
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002E3D865
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABJ83122.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_10
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9375..9896
DNA (522bp) protein (174aa)
aroK1; shikimate kinase
UPI0003CE6EBA related cluster n=1 Tax=unknown RepID=UPI0003CE6EBA
Gluconokinase {ECO:0000313|EMBL:ESY62882.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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9893..10975
DNA (1083bp) protein (361aa)
esterase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288168B rbh
Putative esterase {ECO:0000313|EMBL:AIE87057.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
esterase
SCNpilot_expt_1000_bf_scaffold_7750_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11093..11965
DNA (873bp) protein (291aa)
histidine kinase
Histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSU5_PARL1
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11962..13371
DNA (1410bp) protein (470aa)
hypothetical protein; K06915 rbh
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSU6_PARL1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS62979.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13376..13606
DNA (231bp) protein (77aa)
hypothetical protein; K06915
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSU6_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS62979.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_15
unknown

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comp(13796..13978)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7750_curated_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14126..14647)
DNA (522bp) protein (174aa)
acetyltransferase GCN5 n=1 Tax=Pseudomonas sp. PAMC 26793 RepID=UPI0002F42BD7
GCN5-like N-acetyltransferase
Acetyltransferase, including N-acetylases of ribosomal protein {ECO:0000313|EMBL:ESW57291.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
SCNpilot_expt_1000_bf_scaffold_7750_curated_17
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14935..15924)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DUY7_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EJW20837.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] rbh
SCNpilot_expt_1000_bf_scaffold_7750_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16095..17399)
DNA (1305bp) protein (435aa)
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] rbh
Helicase c2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ70_PARL1 rbh
Helicase c2 {ECO:0000313|EMBL:ABS62053.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 18 items

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