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SCNpilot_expt_1000_bf_scaffold_17121_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_17121_curated_1
unknown

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comp(2..169)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17121_curated_2
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(288..695)
DNA (408bp) protein (136aa)
flgC; flagellar basal body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZCA1_METPB
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_expt_1000_bf_scaffold_17121_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(711..1109)
DNA (399bp) protein (133aa)
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
Flagellar basal-body rod protein FlgB n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW96_PARL1
SCNpilot_expt_1000_bf_scaffold_17121_curated_4
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1255..1542
DNA (288bp) protein (96aa)
fliO; flagellar assembly protein FliO; K02418 flagellar protein FliO/FliZ
Flagellar assembly protein FliO, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IS81_RHOCS
Flagellar assembly protein FliO, putative {ECO:0000313|EMBL:ACI98317.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_17121_curated_5
unknown

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comp(1604..1864)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17121_curated_6
unknown

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comp(1913..2209)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17121_curated_7
unknown

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2804..2941
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17121_curated_8
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2981..3805
DNA (825bp) protein (275aa)
Cation diffusion facilitator family transporter n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WT56_9RHIZ
Cation transporter {ECO:0000313|EMBL:AJY48057.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
cation efflux protein
SCNpilot_expt_1000_bf_scaffold_17121_curated_9
unknown

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3815..4024
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17121_curated_10
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4094..4306)
DNA (213bp) protein (71aa)
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 n=1 Tax=Methyloferula stellata RepID=UPI000380A646
30S ribosomal protein S21 {ECO:0000255|HAMAP-Rule:MF_00358}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_17121_curated_11
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4813..5049
DNA (237bp) protein (79aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUU9_PARL1
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
Displaying 11 items

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