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SCNpilot_expt_1000_bf_scaffold_3090_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3090_curated_1
unknown

Not on your lists

comp(213..407)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3090_curated_2
unknown

Not on your lists

565..771
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3090_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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864..1502
DNA (639bp) protein (213aa)
Toluene tolerance protein, Ttg2 family {ECO:0000313|EMBL:CDO59049.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
organic solvent resistance transport system Ttg2D protein
Organic solvent resistance transport system Ttg2D protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GVW9_CAUCN
SCNpilot_expt_1000_bf_scaffold_3090_curated_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1646..3304)
DNA (1659bp) protein (553aa)
heme ABC transporter ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DEE271 rbh
ABC transporter ATP-binding protein (EC:3.6.3.25 3.6.3.41) rbh
ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABA05738.1}; EC=3.6.3.25 {ECO:0000313|EMBL:ABA05738.1};; EC=3.6.3.41 {ECO:0000313|EMBL:ABA05738.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_3090_curated_5
unknown

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comp(3365..4474)
DNA (1110bp) protein (370aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3090_curated_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4656..5477
DNA (822bp) protein (274aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWE8_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_3090_curated_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5474..5830)
DNA (357bp) protein (119aa)
Putative response regulator receiver protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LGW9_9RHOB
Putative response regulator receiver protein {ECO:0000313|EMBL:EJW12193.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
chemotaxis protein CheY
SCNpilot_expt_1000_bf_scaffold_3090_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5845..6768)
DNA (924bp) protein (308aa)
PAS domain S-box n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZY1_9RHIZ
PAS domain S-box {ECO:0000313|EMBL:EIM29523.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_3090_curated_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6906..7622
DNA (717bp) protein (239aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAV2_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:ACG78003.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_3090_curated_10
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7639..8979
DNA (1341bp) protein (447aa)
hypothetical protein rbh
Sulfatase maturase {ECO:0000313|EMBL:KHL14792.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39L57_BURS3 rbh
SCNpilot_expt_1000_bf_scaffold_3090_curated_11
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8979..9938
DNA (960bp) protein (320aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NXV5_AROAE rbh
Uncharacterized protein {ECO:0000313|EMBL:CAI10109.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_3090_curated_12
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9993..10250
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MVY7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19473.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_expt_1000_bf_scaffold_3090_curated_13
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10261..11451)
DNA (1191bp) protein (397aa)
Potassium transporter n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FJM2_9RHIZ
Potassium transporter {ECO:0000313|EMBL:ESX75476.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
monocomponent cation/proton antiporter
SCNpilot_expt_1000_bf_scaffold_3090_curated_14
unknown

Not on your lists

11588..12955
DNA (1368bp) protein (456aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3090_curated_15
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12939..13841
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000381AC69 rbh
Uncharacterized protein {ECO:0000313|EMBL:EGY00886.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
fumarylacetoacetate (FAA) hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_3090_curated_16
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13893..14318
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PGR1_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ93087.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3090_curated_17
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

14467..15705
DNA (1239bp) protein (413aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
cytochrome c553
Cytochrome c553 n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZKD5_TERRK
Displaying 17 items

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