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SCNpilot_expt_1000_bf_scaffold_5706_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5706_curated_1
unknown

Not on your lists

2..256
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_2
RLO_PLX_64_10, Bacteria

Not on your lists

comp(741..1634)
DNA (894bp) protein (298aa)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
amidohydrolase
Amidohydrolase 2 n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IYE1_CYCMS
SCNpilot_expt_1000_bf_scaffold_5706_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1733..3589
DNA (1857bp) protein (619aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein
TPR repeat-containing protein n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BHH9_CHLPD
SCNpilot_expt_1000_bf_scaffold_5706_curated_4
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3583..3837
DNA (255bp) protein (85aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
tetratricopeptide tpr_1 repeat-containing protein n=1 Tax=Acidovorax radicis RepID=UPI000237784C
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase (EC:2.4.1.-)
SCNpilot_expt_1000_bf_scaffold_5706_curated_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3839..5230
DNA (1392bp) protein (464aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
TPR repeat-containing protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B045
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5706_curated_6
unknown

Not on your lists

5330..5515
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_7
bacterium YEK0313, Bacteria

Not on your lists

5597..6520
DNA (924bp) protein (308aa)
Transcriptional regulator NanR {ECO:0000313|EMBL:CEJ12016.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
UPI0003D64B87 related cluster n=1 Tax=unknown RepID=UPI0003D64B87
transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_5706_curated_8
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6793..8241)
DNA (1449bp) protein (483aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM56910.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000377C997 rbh
sulfite reductase subunit alpha; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
SCNpilot_expt_1000_bf_scaffold_5706_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8411..8569
DNA (159bp) protein (53aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0F4_STAND
Uncharacterized protein {ECO:0000313|EMBL:ADH91275.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_10
unknown

Not on your lists

8602..8871
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_11
unknown

Not on your lists

comp(8751..9026)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9064..9375
DNA (312bp) protein (104aa)
Conserved protein {ECO:0000313|EMBL:GAK46488.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV66_PARL1
SCNpilot_expt_1000_bf_scaffold_5706_curated_13
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9369..10160)
DNA (792bp) protein (264aa)
thiol:disulfide interchange protein (EC:1.8.1.8)
Putative thiol:disulfide interchange protein n=4 Tax=Methylobacterium extorquens RepID=C5AR32_METEA
Putative thiol:disulfide interchange protein {ECO:0000313|EMBL:ACS42305.1}; EC=1.8.1.8 {ECO:0000313|EMBL:ACS42305.1};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_14
unknown

Not on your lists

10496..10732
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_15
unknown

Not on your lists

10983..11099
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_16
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11462..12028
DNA (567bp) protein (189aa)
DNA methyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030BCD50
yhhF; methyltransferase with SAM-dependent methyltransferase domain; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
Putative methyltransferase with SAM-dependent methyltransferase domain {ECO:0000313|EMBL:CCB67044.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_17
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12394..13275)
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y482_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGX99674.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_18
unknown

Not on your lists

comp(13272..13595)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_19
unknown

Not on your lists

comp(14278..14697)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5706_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14934..16256)
DNA (1323bp) protein (441aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL rbh
DNA mismatch repair protein MutL n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT3_PARL1 rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_21
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16433..16915
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS52528.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
Putative uncharacterized protein id=16923382 bin=RBG_16_Aminicenantes_63_16_plus species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
SCNpilot_expt_1000_bf_scaffold_5706_curated_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16756..18030)
DNA (1275bp) protein (425aa)
glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] rbh
Glucose-6-phosphate isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPT2_PARL1 rbh
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_23
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18120..19583)
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036BF184 rbh
peptidase M16 (EC:3.4.24.-) rbh
Peptidase M16, putative {ECO:0000313|EMBL:ACJ00939.1}; EC=3.4.24.- {ECO:0000313|EMBL:ACJ00939.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19580..20977)
DNA (1398bp) protein (466aa)
zinc protease n=1 Tax=Xanthobacteraceae RepID=UPI00037EF7C4 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35113.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
peptidase M16 domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_5706_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20964..21539)
DNA (576bp) protein (192aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPS9_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS61912.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_26
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21539..21940)
DNA (402bp) protein (134aa)
Lipoprotein signal peptidase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RWV9_9RHIZ
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
SCNpilot_expt_1000_bf_scaffold_5706_curated_27
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22025..24991)
DNA (2967bp) protein (989aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Isoleucine--tRNA ligase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3J8_AZOL4 rbh
ileS; isoleucine tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] rbh
SCNpilot_expt_1000_bf_scaffold_5706_curated_28
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25014..25976)
DNA (963bp) protein (321aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] rbh
Riboflavin biosynthesis protein RibF n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQT1_PARL1 rbh
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5706_curated_29
unknown

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comp(25985..26173)
DNA (189bp) protein (63aa)

This feature has no annotations

Displaying 29 items

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