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SCNpilot_expt_1000_bf_scaffold_11756_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11756_curated_1
Sutterella sp. CAG:397, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..370
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sutterella sp. CAG:397 RepID=R7BY18_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDD70764.1}; TaxID=1262976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella; environmental samples.;" source="Sutterella sp. CAG:397.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11756_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(404..1402)
DNA (999bp) protein (333aa)
small GTP-binding protein GTPase; K03979 GTP-binding protein rbh
GTPase Obg n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5R5_HYPSM rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_11756_curated_3
unknown

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comp(1399..1524)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11756_curated_4
unknown

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comp(1536..1754)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11756_curated_5
unknown

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comp(2174..2302)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11756_curated_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2463..2771)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Oceanibaculum indicum P24 RepID=K2JCW7_9PROT
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_expt_1000_bf_scaffold_11756_curated_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2897..3991
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J0X1_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE76571.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_11756_curated_8
unknown

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comp(3999..4559)
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11756_curated_9
R_Coxiella_42_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4592..5233
DNA (642bp) protein (214aa)
Tax=RIFCSPHIGHO2_12_FULL_Coxiella_42_15_curated
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D93A63
Protein tyrosine/serine phosphatase
SCNpilot_expt_1000_bf_scaffold_11756_curated_10
unknown

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comp(5199..5426)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11756_curated_11
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5534..6070
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641666
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
2OG-Fe(II) oxygenase; K03919 alkylated DNA repair protein [EC:1.14.11.-]
SCNpilot_expt_1000_bf_scaffold_11756_curated_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6337..7914)
DNA (1578bp) protein (526aa)
Uncharacterized protein {ECO:0000313|EMBL:KJB90204.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
EAL domain-containing protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EJR2_CAUCE
putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(S)
SCNpilot_expt_1000_bf_scaffold_11756_curated_13
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8256..8897)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6L8B9_9RHOB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
outer membrane lipoprotein carrier protein LolA
SCNpilot_expt_1000_bf_scaffold_11756_curated_14
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9004..10014
DNA (1011bp) protein (337aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
glycerol-3-phosphate dehydrogenase (NAD(P)(+)); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] rbh
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=GPDA_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_11756_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10011..10430
DNA (420bp) protein (140aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSS8_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS62961.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11756_curated_16
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..10764)
DNA (315bp) protein (105aa)
Small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
Small multidrug resistance protein n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AAN8_BURGB
Small multidrug resistance protein {ECO:0000313|EMBL:ACR29698.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
SCNpilot_expt_1000_bf_scaffold_11756_curated_17
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10876..11112)
DNA (237bp) protein (79aa)
Phospholipid N-methyltransferase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIS4_9BRAD
Phospholipid N-methyltransferase {ECO:0000313|EMBL:CCE06362.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
ribosomal RNA adenine methylase transferase
SCNpilot_expt_1000_bf_scaffold_11756_curated_18
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11238..11477)
DNA (240bp) protein (80aa)
Methyltransferase type 12 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQD8_METTR
Phosphatidylethanolamine N-methyltransferase {ECO:0000313|EMBL:ESR26082.1}; EC=2.1.1.17 {ECO:0000313|EMBL:ESR26082.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
methyltransferase domain family protein
SCNpilot_expt_1000_bf_scaffold_11756_curated_19
unknown

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comp(11562..11759)
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying 19 items

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