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SCNpilot_expt_1000_bf_scaffold_11329_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11329_curated_1
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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22..267
DNA (246bp) protein (82aa)
Uncharacterized protein {ECO:0000313|EMBL:KEJ90383.1}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565.;"
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QGI8_BREDI
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11329_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(415..906)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CD108
hypothetical protein; K09965 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67045.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_11329_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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1031..1588
DNA (558bp) protein (186aa)
Scaffold protein Nfu/NifU {ECO:0000313|EMBL:GAK43797.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scaffold protein Nfu/NifU
Scaffold protein Nfu/NifU n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ76_PARL1
SCNpilot_expt_1000_bf_scaffold_11329_curated_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1588..2208
DNA (621bp) protein (207aa)
rutE; oxidoreductase subunit of the alternative pyrimidine degradation pathway
Putative NADH dehydrogenase/NAD(P)H nitroreductase THI_1147 n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CL88_THIA3
Putative NADH dehydrogenase/NAD(P)H nitroreductase THI_1147 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCNpilot_expt_1000_bf_scaffold_11329_curated_5
unknown

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2462..2902
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11329_curated_6
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2899..3330
DNA (432bp) protein (144aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK07_BREDI
putative ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
SCNpilot_expt_1000_bf_scaffold_11329_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3366..3785
DNA (420bp) protein (140aa)
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
Ferric uptake regulator, Fur family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ80_PARL1
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ABS65213.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11329_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3785..4576
DNA (792bp) protein (264aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ81_PARL1
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ABS65214.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11329_curated_9
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5483..5623
DNA (141bp) protein (47aa)
MiaB family RNA modification enzyme; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
(Dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Rhodobacter capsulatus YW1 RepID=V8GYQ3_RHOCA
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobac
Displaying 9 items

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