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SCNpilot_expt_1000_bf_scaffold_4943_curated

Search features with annotation key words

Displaying items 31-53 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4943_curated_31
unknown

Not on your lists

comp(23837..23962)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_32
unknown

Not on your lists

24092..24487
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_33
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24587..25342)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ80_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM26122.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_34
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25395..26621
DNA (1227bp) protein (409aa)
Ferrous transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MTR2_9RHIZ rbh
Ferrous transporter {ECO:0000313|EMBL:EKF20777.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
magA; ferrous transporter; K03455 monovalent cation:H+ antiporter-2, CPA2 family
SCNpilot_expt_1000_bf_scaffold_4943_curated_35
unknown

Not on your lists

comp(26635..26751)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_36
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26724..27389)
DNA (666bp) protein (222aa)
cation diffusion facilitator family transporter; K13283 ferrous-iron efflux pump FieF
Cation diffusion facilitator family transporter n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BW16_NITHN
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ADE13666.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_37
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27491..28510)
DNA (1020bp) protein (340aa)
pdxH; pyridoxamine 5'-phosphate oxidase; K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5I0_AZOL4
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_38
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29505..29810
DNA (306bp) protein (102aa)
DnaJ domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLY9_9PROT
DnaJ domain protein {ECO:0000313|EMBL:EFH11674.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
putative heat shock protein DnaJ
SCNpilot_expt_1000_bf_scaffold_4943_curated_39
unknown

Not on your lists

comp(30039..30197)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_40
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30728..32410
DNA (1683bp) protein (561aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=AROC_METSB rbh
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_41
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32660..33424)
DNA (765bp) protein (255aa)
hypothetical protein
Peptidase, C13 family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GXU7_CAUCN
Uncharacterized protein {ECO:0000313|EMBL:AAK24075.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_42
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33421..34467)
DNA (1047bp) protein (349aa)
23S rRNA (uracil-5-)-methyltransferase RumA; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR73_PARL1
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ABS62406.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_43

Not on your lists

comp(34899..36359)
DNA (1461bp) protein (487aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QE57_9BRAD rbh
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_44
unknown

Not on your lists

36642..36788
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_45

Not on your lists

comp(36852..37067)
DNA (216bp) protein (72aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
xseB; exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=EX7S_PHEZH
SCNpilot_expt_1000_bf_scaffold_4943_curated_46

Not on your lists

comp(37274..39079)
DNA (1806bp) protein (602aa)
Signal peptide peptidase SppA {ECO:0000313|EMBL:AHN97614.1}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
sppA; signal peptide peptidase SppA; K04773 protease IV [EC:3.4.21.-] rbh
Signal peptide peptidase SppA n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z583_AZOL4 rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_47
bacterium YEK0313, Bacteria

Not on your lists

comp(39236..39418)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003707288
Uncharacterized protein {ECO:0000313|EMBL:CEJ12908.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4943_curated_48
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39553..40023
DNA (471bp) protein (157aa)
protein-methionine-S-oxide reductase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA153
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:AJX14576.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
methionine-R-sulfoxide reductase (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
SCNpilot_expt_1000_bf_scaffold_4943_curated_49
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40122..40730)
DNA (609bp) protein (203aa)
Invasion associated locus B family protein n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5LYD4_RHOSH
invasion associated locus B family protein
Invasion associated locus B family protein {ECO:0000313|EMBL:ABN76530.1}; Flags: Precursor;; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_50
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40727..41230)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2J5X7_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ENA32730.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_51
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41477..42184)
DNA (708bp) protein (236aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037AE4CE
peptide methionine sulfoxide reductase
SCNpilot_expt_1000_bf_scaffold_4943_curated_52
unknown

Not on your lists

comp(42292..43539)
DNA (1248bp) protein (416aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QX32_METTR rbh
Adenosylmethionine--8-amino-7-oxononanoate transaminase {ECO:0000313|EMBL:CPR16384.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CPR16384.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
adenosylmethionine--8-amino-7-oxononanoate transaminase (EC:2.6.1.62) rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_53
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43536..43970)
DNA (435bp) protein (145aa)
bioD; dithiobiotin synthetase (EC:6.3.3.3); K01935 dethiobiotin synthetase [EC:6.3.3.3]
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=BIOD_RHOPS
ATP-dependent dethiobiotin synthetase BioD {ECO:0000255|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000255|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000255|HAMAP-Rule:MF_00336}; Short=DTBS {ECO:0000255|HAMAP-Rule:MF_00336};; Dethiobiotin synthase {ECO:0000255|HAMAP-Rule:MF_00336}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Displaying items 31-53 of 53 in total

View Taxonomy