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SCNpilot_expt_1000_bf_scaffold_4943_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4943_curated_1
unknown

Not on your lists

1..201
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_2
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

198..374
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000360E1A4
Methyltransferase protein {ECO:0000313|EMBL:KFB08788.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4943_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

390..836
DNA (447bp) protein (149aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQT0_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS62263.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_4
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(821..2284)
DNA (1464bp) protein (488aa)
amino acid carrier protein; K03310 alanine or glycine:cation symporter, AGCS family rbh
Amino acid carrier protein n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WUN1_HALHL rbh
Amino acid carrier protein {ECO:0000313|EMBL:ABM61393.1}; TaxID=349124 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_5
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2387..3820
DNA (1434bp) protein (478aa)
Tax=BJP_IG2069_Syntrophobacterales_46_30
Putative uncharacterized protein id=1727565 bin=GWB2_Elusimicrobia_63_16 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB2_Elusimicrobia_63_16 organism_group=Elusimicrobia rbh
amino acid/polyamine/organocation transporter; K03294 basic amino acid/polyamine antiporter, APA family rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_6
unknown

Not on your lists

comp(3848..4111)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_7
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4933..5379
DNA (447bp) protein (149aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2U0_9PROT
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000313|EMBL:EGY00165.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
ubiD; 3-polyprenyl-4-hydroxybenzoate decarboxylase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
SCNpilot_expt_1000_bf_scaffold_4943_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5447..6784
DNA (1338bp) protein (446aa)
peptidase U62 modulator of DNA gyrase; K03592 PmbA protein rbh
Peptidase U62 modulator of DNA gyrase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQS1_PARL1 rbh
Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ABS62254.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6771..7742
DNA (972bp) protein (324aa)
inositol phosphatase n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI0003750AC3
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:EJL31719.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
inositol-phosphate phosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
SCNpilot_expt_1000_bf_scaffold_4943_curated_10
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7803..8033
DNA (231bp) protein (77aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I695_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:BAF88378.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_11
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8121..9896
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DGW6_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EJW21363.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
msbA; multidrug ABC transporter ATPase/permease rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_12
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9915..11144
DNA (1230bp) protein (410aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] rbh
3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXD9_RHOCS rbh
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:ACJ00963.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_13
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11141..11884
DNA (744bp) protein (248aa)
lpxK; tetraacyldisaccharide 4'-kinase
Tetraacyldisaccharide 4'-kinase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AEX8_AZOBR
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_14
unknown

Not on your lists

11884..12108
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000363E3F0
SCNpilot_expt_1000_bf_scaffold_4943_curated_15
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12105..12917
DNA (813bp) protein (271aa)
Lauroyl acyltransferase {ECO:0000313|EMBL:AIB11034.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
lipid A biosynthesis acyltransferase
Lipid A biosynthesis acyltransferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AEX9_AZOBR
SCNpilot_expt_1000_bf_scaffold_4943_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13016..13696
DNA (681bp) protein (227aa)
Cephalosporin hydroxylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKU8_9RHIZ
Cephalosporin hydroxylase {ECO:0000313|EMBL:EIM24590.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4943_curated_17
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13704..14543)
DNA (840bp) protein (280aa)
peptidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037FCE3F
Uncharacterized protein {ECO:0000313|EMBL:KFN48015.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
peptidase family M23/M37
SCNpilot_expt_1000_bf_scaffold_4943_curated_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14540..14758)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B7FB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91270.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14768..16252)
DNA (1485bp) protein (495aa)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3I9_9BRAD rbh
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
xseA; exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16297..17568
DNA (1272bp) protein (424aa)
phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] rbh
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HQ2_RHOP5 rbh
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_4943_curated_21
unknown

Not on your lists

comp(17869..17988)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4943_curated_22

Not on your lists

comp(18189..18644)
DNA (456bp) protein (152aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000371B14C
CMP/dCMP deaminase
SCNpilot_expt_1000_bf_scaffold_4943_curated_23

Not on your lists

19108..19422
DNA (315bp) protein (105aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
Pseudouridine synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3I5_9BRAD
ribosomal large subunit pseudouridine synthase B (EC:4.2.1.70); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
SCNpilot_expt_1000_bf_scaffold_4943_curated_24
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19537..19767
DNA (231bp) protein (77aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_expt_1000_bf_scaffold_4943_curated_25
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19934..20530
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U420_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP61124.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Tyrosine protein kinase (EC:3.5.2.6); K07126
SCNpilot_expt_1000_bf_scaffold_4943_curated_26
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20608..21171)
DNA (564bp) protein (188aa)
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:ETW13570.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00035DF21B
putative 2OG-Fe(II) oxygenase
SCNpilot_expt_1000_bf_scaffold_4943_curated_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21322..22191)
DNA (870bp) protein (290aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7I5_TERSS rbh
SCNpilot_expt_1000_bf_scaffold_4943_curated_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22161..22469)
DNA (309bp) protein (103aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
FAD dependent oxidoreductase
FAD dependent oxidoreductase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V7I5_TERSS
SCNpilot_expt_1000_bf_scaffold_4943_curated_29
unknown

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comp(22562..22717)
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036AB037
SCNpilot_expt_1000_bf_scaffold_4943_curated_30
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22804..23781)
DNA (978bp) protein (326aa)
magnesium/cobalt transporter CorA n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B43B1C
Putative divalent cation transporter, CorA-like {ECO:0000313|EMBL:CCD95914.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
divalent cation transporter, CorA-like; K16074 zinc transporter
Displaying items 1-30 of 53 in total

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