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SCNpilot_expt_1000_bf_scaffold_10838_curated_11

Organism: scnpilot_dereplicated_Alphaproteobacteria_4

partial RP 35 / 55 BSCG 32 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: comp(11323..11664)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 58.5
  • Coverage: 94.0
  • Bit_score: 97
  • Evalue 3.60e-18
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP43_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 58.5
  • Coverage: 94.0
  • Bit_score: 97
  • Evalue 1.10e-17
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABS61676.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.5
  • Coverage: 94.0
  • Bit_score: 97
  • Evalue 1.60e-17

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Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 342
ATGCNNNNNNNNGGCGAGGACCAGGTCCATTCCGCCGAACTCTCCGATACGGTGCGCGCCCTCAAGCATCTGTCGGACGAACAGCGCGAAGCCCTGATCCTTGTGGGCGCGGGCGGCTTCTCCTATGAGGATGCCGCCGCGATCTGCAAATGCGCCGTGGGCACGGTCAAGAGCCGTGTTGCCCGCGCGCGCAAGACCTTGATAGAGATTTTGGACGGTGGCGACACGCTGGGCGATGCGTCGCGGCCCGCCGGGGGAGATGCCGCTCGTGAGATCATGGCGCAGCTGGATCAGCTCAGCCCTGGCAGGGCCGAGGCGCTGGGCAAAAAGCGCCCCAAATAA
PROTEIN sequence
Length: 114
MXXXGEDQVHSAELSDTVRALKHLSDEQREALILVGAGGFSYEDAAAICKCAVGTVKSRVARARKTLIEILDGGDTLGDASRPAGGDAAREIMAQLDQLSPGRAEALGKKRPK*