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SCNpilot_expt_1000_bf_scaffold_10838_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10838_curated_1
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(190..1035)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H406_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL37540.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
M1_3105; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10838_curated_2
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(1166..1876)
DNA (711bp) protein (237aa)
Putative uncharacterized protein id=3798955 bin=GWF2_Lentisphaerae_49_21 species=Methanococcus maripaludis genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10838_curated_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3148..3633
DNA (486bp) protein (162aa)
cupin n=1 Tax=Sphingomonas elodea RepID=UPI0002630463
Uncharacterized protein {ECO:0000313|EMBL:AHE56385.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
cupin
SCNpilot_expt_1000_bf_scaffold_10838_curated_4
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(3637..4791)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FA73D rbh
Tax=GWA2_Bacteroidetes_40_15_curated
D-mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
SCNpilot_expt_1000_bf_scaffold_10838_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4853..6400)
DNA (1548bp) protein (516aa)
Conserved protein {ECO:0000313|EMBL:GAK46103.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Thiamine pyrophosphate enzyme domain protein TPP-binding protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07Q36_RHOP5 rbh
SCNpilot_expt_1000_bf_scaffold_10838_curated_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6496..7740
DNA (1245bp) protein (415aa)
Uncharacterized protein {ECO:0000313|EMBL:KFG70402.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein rbh
Monooxygenase FAD-binding n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LWN2_METRJ rbh
SCNpilot_expt_1000_bf_scaffold_10838_curated_7
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7868..8098)
DNA (231bp) protein (77aa)
dihydrolipoamide dehydrogenase n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B50474
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
SCNpilot_expt_1000_bf_scaffold_10838_curated_8
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8437..8700
DNA (264bp) protein (88aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_10838_curated_9
Arthrobacter aurescens, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8782..9093
DNA (312bp) protein (104aa)
IS1380 family transposase
IS1380 family transposase n=3 Tax=Bacteria RepID=A1RCW9_ARTAT
IS1380 family transposase {ECO:0000313|EMBL:ABM10583.1}; TaxID=290340 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter aurescens (strain TC1).;"
SCNpilot_expt_1000_bf_scaffold_10838_curated_10
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9597..11288)
DNA (1692bp) protein (564aa)
signal transduction histidine kinase rbh
Signal transduction histidine kinase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGX4_XANP2 rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:ABS67267.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_10838_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11323..11664)
DNA (342bp) protein (114aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP43_PARL1
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABS61676.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_10838_curated_12
unknown

Not on your lists

comp(11947..12150)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10838_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12633..13034
DNA (402bp) protein (134aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489C54
Phyllosphere-induced regulator PhyR {ECO:0000313|EMBL:AJP72033.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
two-component response regulator
Displaying 13 items

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