ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8799_curated_22

Organism: scnpilot_dereplicated_Alphaproteobacteria_4

partial RP 35 / 55 BSCG 32 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: comp(19287..20024)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036453AF similarity UNIREF
DB: UNIREF100
  • Identity: 71.4
  • Coverage: 245.0
  • Bit_score: 355
  • Evalue 5.00e-95
  • rbh
truA; tRNA pseudouridine synthase A (EC:5.4.99.12) similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 245.0
  • Bit_score: 341
  • Evalue 1.80e-91
  • rbh
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.8
  • Coverage: 245.0
  • Bit_score: 341
  • Evalue 8.00e-91

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hyphomicrobium denitrificans → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 738
ATGCCGCGCTATCGCCTCACCCTCGAATATGACGGCGGCCCCTTTGTGGGCTGGCAGCGTCAGGCCGAGGGGGCCTCGGTGCAGGCGTCGCTGGAAGCCGCCATCGAAAAGCTGTCGGGCGAACGCGTCACCGTCACGGGCGCGGGCCGCACCGATGCCGGTGTCCATGCCCTGGGGCAGGTGGCGCATTTCGACCTGGAAAAAAGCTTCGCGCCGGGCAAGGTGCGCGACGCCCTGAACTTCCACCTGCGGCCCGATCCGATAGCGGTACTGGAGGCGGCGGAAGCGACCGGAGATTTCCACGCCCGCTTTTCCGCCACTTCGCGGCATTATCTGTTCCGCATCTTGAACCGCCGCAGCCCGCCCGCGCTGGATCGCGGCCGGGTCTGGCATGTCTCGCCCGCGCTGGATGCCGAGGCGATGGATGCCGCCGCGCGGCATCTGGTGGGCCGGCATGATTTCACCACCTTCCGCGCCGCCGAATGCCAGTCCCAGTCGCCGGTCAAGACCCTGGACCGGCTGACCGTGTCGCGCCGCGCCGACGAAATCCATATCGAAGCCTCGGCGCGGTCTTTCCTGCATCACCAGATTCGCAGCTTCGCCGGAACGCTCAAGCTGGTGGGTGAAGGCAAGTGGACGCCGCGCGACGTCAAGACGGCGTTGGAGGCGCGCGACCGCACCGCCTGCGGTCCGGTCTCGCCGCCGGACGGGCTGTATCTGACGCGGGTGGATTATTAG
PROTEIN sequence
Length: 246
MPRYRLTLEYDGGPFVGWQRQAEGASVQASLEAAIEKLSGERVTVTGAGRTDAGVHALGQVAHFDLEKSFAPGKVRDALNFHLRPDPIAVLEAAEATGDFHARFSATSRHYLFRILNRRSPPALDRGRVWHVSPALDAEAMDAAARHLVGRHDFTTFRAAECQSQSPVKTLDRLTVSRRADEIHIEASARSFLHHQIRSFAGTLKLVGEGKWTPRDVKTALEARDRTACGPVSPPDGLYLTRVDY*