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SCNpilot_expt_1000_bf_scaffold_8799_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8799_curated_1
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..531
DNA (531bp) protein (177aa)
Transcriptional regulator, AsnC family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WE66_9CAUL
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EDX78950.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8799_curated_2
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

847..2319
DNA (1473bp) protein (491aa)
signal peptide rbh
Signal peptide n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ95_PEDHD rbh
Signal peptide {ECO:0000313|EMBL:ACU02577.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2857..3498)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HEC0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83128.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8799_curated_4
Helicobacter sp. MIT 05-5294, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3535..3879)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI00030FA052
Uncharacterized protein {ECO:0000313|EMBL:KGL36083.1}; TaxID=1548150 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter sp. MIT 05-5294.;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_5
Pediococcus claussenii, Pediococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(3916..4566)
DNA (651bp) protein (217aa)
nitroreductase family protein
Nitroreductase family protein n=1 Tax=Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 / KCTC 3811 / P06) RepID=G8PA63_PEDCP
Nitroreductase family protein {ECO:0000313|EMBL:AEV94502.1}; TaxID=701521 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus.;" source="Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 /; KCTC 3811 / P06).;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_6
Pseudomonas sp. GM48, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4849..5424
DNA (576bp) protein (192aa)
Transcriptional regulator n=1 Tax=Pseudomonas sp. GM48 RepID=J3A9G4_9PSED
Transcriptional regulator {ECO:0000313|EMBL:EJM62078.1}; TaxID=1144330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM48.;"
TetR family transcripitonal regulator
SCNpilot_expt_1000_bf_scaffold_8799_curated_trna_1
unknown

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comp(5782..5855)
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_8799_curated_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6142..7272
DNA (1131bp) protein (377aa)
Uncharacterized protein {ECO:0000313|EMBL:CDO58256.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036DED5C
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8799_curated_8
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7375..9060
DNA (1686bp) protein (562aa)
Gamma-glutamyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KER6_9PROT rbh
Gamma-glutamyltransferase {ECO:0000313|EMBL:KJV29909.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
ggt; gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
SCNpilot_expt_1000_bf_scaffold_8799_curated_9
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9167..9301
DNA (135bp) protein (45aa)
rpmH; 50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
50S ribosomal protein L34 n=2 Tax=Methylobacterium RepID=RL34_METRJ
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_10
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9336..9689
DNA (354bp) protein (118aa)
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
Ribonuclease P n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EFE9_9RHOB
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
SCNpilot_expt_1000_bf_scaffold_8799_curated_11
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9693..9941
DNA (249bp) protein (83aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Prevotella sp. CAG:873 RepID=R7J324_9BACT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1262936 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8799_curated_12
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9954..11795
DNA (1842bp) protein (614aa)
Membrane protein insertase YidC n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUQ4_9RHIZ rbh
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC rbh
SCNpilot_expt_1000_bf_scaffold_8799_curated_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12500..13489
DNA (990bp) protein (330aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
argB; acetylglutamate kinase rbh
Acetylglutamate kinase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AI64_AZOBR rbh
SCNpilot_expt_1000_bf_scaffold_8799_curated_14
Hyphomonas hirschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13497..14441
DNA (945bp) protein (315aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C544_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ95582.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas hirschiana VP5.;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_15
unknown

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comp(14438..14578)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8799_curated_16
Sporothrix schenckii, Sporothrix, Ophiostomatales, Sordariomycetidae, Ascomycota, Fungi

Not on your lists

14892..15548
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183) RepID=U7PS25_SPOS1
Uncharacterized protein {ECO:0000313|EMBL:KJR89490.1}; TaxID=1397361 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; mitosporic Ophiostomataceae; Sporothrix.;" source="Sporothrix schenckii 1099-18.;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_17
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15830..16561
DNA (732bp) protein (244aa)
Pyrimidine 5'-nucleotidase {ECO:0000313|EMBL:KCZ92109.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
HAD family hydrolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B2FEFB
pyrimidine 5'-nucleotidase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_1000_bf_scaffold_8799_curated_18
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16564..17382
DNA (819bp) protein (273aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] rbh
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=DAPD_METS4 rbh
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000255|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811}; Short=THP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811};; Short=Tetrahydropicolinate succinylase {ECO:0000255|HAMAP-Rule:MF_00811};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methyloba
SCNpilot_expt_1000_bf_scaffold_8799_curated_19
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17382..17780
DNA (399bp) protein (133aa)
Succinyl-diaminopimelate desuccinylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GYI0_9PROT
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
SCNpilot_expt_1000_bf_scaffold_8799_curated_20
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17810..18484
DNA (675bp) protein (225aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000361DF2E
dapE; succinyl-diaminopimelate desuccinylase DapE (EC:3.5.1.18)
SCNpilot_expt_1000_bf_scaffold_8799_curated_21
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18481..19290
DNA (810bp) protein (270aa)
Glutamate racemase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHX7_9DELT
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3]
SCNpilot_expt_1000_bf_scaffold_8799_curated_22
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19287..20024)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036453AF rbh
truA; tRNA pseudouridine synthase A (EC:5.4.99.12) rbh
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20024..20941)
DNA (918bp) protein (306aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] rbh
Methionyl-tRNA formyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=FMT_PARL1 rbh
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_8799_curated_24
unknown

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comp(20941..21045)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8799_curated_25
unknown

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21306..21452
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8799_curated_26
unknown

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21535..21651
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 27 items

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