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SCNpilot_expt_1000_bf_scaffold_3282_curated_7

Organism: scnpilot_dereplicated_Alphaproteobacteria_4

partial RP 35 / 55 BSCG 32 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: comp(5382..6269)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.9
  • Coverage: 287.0
  • Bit_score: 422
  • Evalue 4.30e-115
RNA polymerase sigma factor RpoH n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WA07_9CAUL similarity UNIREF
DB: UNIREF100
  • Identity: 74.3
  • Coverage: 284.0
  • Bit_score: 421
  • Evalue 6.80e-115
  • rbh
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 72.7
  • Coverage: 289.0
  • Bit_score: 415
  • Evalue 1.20e-113
  • rbh

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Taxonomy

Brevundimonas sp. EAKA → Brevundimonas → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 888
ATGAGCGGCCGCGGACTGCCCGCCTTGTCGGGCGAAGCCGGCCTGTCGCGCTATCTGGCCGAAATCCGCAAGTTNNNNNNNCTGTCGGCGGAGGATGAATACATGTTCGCCAAACGCTGGCGCGAGCATGAAGACCCCGAGGCGGCGCGCCGCCTGGTCACCAGCCATCTGCGCCTGGTCGCCAAGATCGCCATGGGCTATCGCGGCTATGGCCTGCCGGTGTCCGAAATCGTCTCCGAGGGCAATGTCGGCCTGATGCAGGCGGTCAAGCGTTTCGAGCCCGACAAAGGCTTCCGGCTGGCCACCTATGCCATGTGGTGGATCCGGGCCTCGATCCAGGAATATGTGCTGCGCTCTTGGAGCATGGTGAAGATGGGCACCACCGCGGCCCAGAAGAAGCTGTTCTTCAACCTGCGAAAGGCCAAGAACAATATCGGCGCGATCGAGGAAGGCGACCTGACGCCCGCGCACACCGCCACCCTGGCCGACCAGCTGGGCGTCACCGAGACCGAGGTGACCGAGATGAACCGCCGCCTGTCGGGCGGCGACGCCTCGCTCAATGCGCCGCTGCGCTCGGACGGCGAAAGCGAATGGCAGGACTGGCTGGCCGACGACACCGCCGACCAGGAAACCCGCCTGGCCGACCGCGAGGAAATGAGCGCGCGGCATCAGCTTCTGGTCGGCGCGATGAAGGACCTGACCGAACGCGAGCGCGACATCATCCAGGCCCGCCGCCTGCAGGACGAGCCCGCCACGCTGGAGGAACTGTCGCAGAAATACGGCGTCAGCCGCGAGCGCGTGCGGCAGATCGAGGTCCGCGCCTTTGAAAAGCTGCAGCACGGCATGAAGGCGGCGATGCAGCAGGCCGCCCTTCCCGCCCCGGCCTAG
PROTEIN sequence
Length: 296
MSGRGLPALSGEAGLSRYLAEIRKXXXLSAEDEYMFAKRWREHEDPEAARRLVTSHLRLVAKIAMGYRGYGLPVSEIVSEGNVGLMQAVKRFEPDKGFRLATYAMWWIRASIQEYVLRSWSMVKMGTTAAQKKLFFNLRKAKNNIGAIEEGDLTPAHTATLADQLGVTETEVTEMNRRLSGGDASLNAPLRSDGESEWQDWLADDTADQETRLADREEMSARHQLLVGAMKDLTERERDIIQARRLQDEPATLEELSQKYGVSRERVRQIEVRAFEKLQHGMKAAMQQAALPAPA*