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SCNpilot_expt_1000_bf_scaffold_3282_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3282_curated_1
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..442)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003094874
Hopanoid biosynthesis associated RND transporter like protein HpnN {ECO:0000313|EMBL:EHL98713.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hopanoid biosynthesis associated RND transporter like protein HpnN; K07003
SCNpilot_expt_1000_bf_scaffold_3282_curated_2
Streptomyces sp. NRRL S-104, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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568..852
DNA (285bp) protein (95aa)
Chorismate mutase {ECO:0000313|EMBL:KJY21368.1}; TaxID=1609135 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-104.;"
chorismate mutase
Chorismate mutase n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JT80_STREN
SCNpilot_expt_1000_bf_scaffold_3282_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1114..2706)
DNA (1593bp) protein (531aa)
Phosphoglycerate dehydrogenase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLT2_AFIFE rbh
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKS29404.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
serA2; D-3-phosphoglycerate dehydrogenase SerA (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
SCNpilot_expt_1000_bf_scaffold_3282_curated_4
Aeromonas sp. L_1B5_3, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2728..3489)
DNA (762bp) protein (254aa)
enhanced serine sensitivity protein SseB n=1 Tax=Dickeya zeae RepID=UPI00036CFF4B
Contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ84637.1}; TaxID=1588629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. L_1B5_3.;"
enhanced serine sensitivity protein SseB
SCNpilot_expt_1000_bf_scaffold_3282_curated_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3519..4673)
DNA (1155bp) protein (385aa)
Phosphoserine aminotransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZX3_9PROT rbh
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00019609}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00019609};; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52] rbh
SCNpilot_expt_1000_bf_scaffold_3282_curated_6
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4844..5359
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036CB4B4
Uncharacterized protein {ECO:0000313|EMBL:EMG52371.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3282_curated_7
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5382..6269)
DNA (888bp) protein (296aa)
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
RNA polymerase sigma factor RpoH n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WA07_9CAUL rbh
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor rbh
SCNpilot_expt_1000_bf_scaffold_3282_curated_8
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6373..7380)
DNA (1008bp) protein (336aa)
Pseudouridine synthase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AAW5_9PROT rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
pseudouridylate synthase, 23S RNA-specific; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] rbh
SCNpilot_expt_1000_bf_scaffold_3282_curated_9
unknown

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7388..7714
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3282_curated_10
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7711..8145
DNA (435bp) protein (145aa)
Mov34/MPN/PAD-1
Mov34/MPN/PAD-1 n=2 Tax=Rhodospirillum rubrum RepID=G2TEG0_RHORU
Mov34/MPN/PAD-1 {ECO:0000313|EMBL:ABC21914.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_1000_bf_scaffold_3282_curated_11
unknown

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comp(8082..8201)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3282_curated_trna_1
unknown

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8519..8590
DNA (72bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_3282_curated_12
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8906..9292
DNA (387bp) protein (129aa)
hypothetical protein
Uncharacterized protein n=3 Tax=Sphingobium RepID=D4Z896_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:EQB03009.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
Displaying 13 items

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