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SCNpilot_expt_1000_bf_scaffold_5681_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5681_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..281)
DNA (279bp) protein (93aa)
Putative cytochrome P450 132 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6T2_9RHIZ
Putative cytochrome P450 132 {ECO:0000313|EMBL:EYR83742.1}; EC=1.14.-.- {ECO:0000313|EMBL:EYR83742.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_5681_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(337..1401)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2A5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83741.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5681_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1520..2827)
DNA (1308bp) protein (436aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYI1_9RHIZ rbh
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU rbh
SCNpilot_expt_1000_bf_scaffold_5681_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2842..3303)
DNA (462bp) protein (154aa)
GCN5-like N-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHU6_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EYR83739.1}; EC=2.3.1.82 {ECO:0000313|EMBL:EYR83739.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase (EC:2.3.1.82)
SCNpilot_expt_1000_bf_scaffold_5681_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3300..3872)
DNA (573bp) protein (191aa)
ATP-dependent protease subunit HslV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ0_9RHIZ rbh
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hslV; ATP-dependent protease peptidase subunit (EC:3.4.25.-); K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] rbh
SCNpilot_expt_1000_bf_scaffold_5681_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4159..4821)
DNA (663bp) protein (221aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR83746.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A4B7_RHIFH rbh
SCNpilot_expt_1000_bf_scaffold_5681_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5222..5797
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSW8_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83747.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5681_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5798..6367)
DNA (570bp) protein (190aa)
Acid tolerance regulatory protein ActR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1X2_9RHIZ rbh
Acid tolerance regulatory protein ActR {ECO:0000313|EMBL:EYR83748.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
actR; two-component response regulator protein; K15012 two-component system, response regulator RegA rbh
SCNpilot_expt_1000_bf_scaffold_5681_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6444..7043)
DNA (600bp) protein (200aa)
Sensor histidine kinase RegB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXA6_9RHIZ rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two-component sensor histidine kinase protein; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
Displaying 9 items

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