ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8846_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(7894..9105)

Top 3 Functional Annotations

Value Algorithm Source
NADH-quinone oxidoreductase subunit D n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HIP3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 94.5
  • Coverage: 403.0
  • Bit_score: 795
  • Evalue 3.10e-227
  • rbh
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.5
  • Coverage: 403.0
  • Bit_score: 795
  • Evalue 4.30e-227
NADH dehydrogenase I subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 403.0
  • Bit_score: 790
  • Evalue 3.10e-226
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium lindaniclasticum → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1212
ATGACGATGCAGCTGGAACAGTCGCCCACCACCGGCGACGAGGTGATCACCAACTACACGATCAATTTCGGCCCCCAGCACCCGGCGGCGCACGGCGTGCTGCGCATGGTGATGGAGTTGGACGGCGAGATCATCGAGCGGATCGATCCGCATGTCGGCCTGCTCCACCGCGGCACCGAGAAGCTGATCGAATACAAGACCTATCTCCAGGCGCTGCCTTATTTCGACCGGCTGGATTACTGCAGCCCGCTGGCGATGGAATATTCCTACGTCCTGGCGATCGAGAAGCTGCTCAACATCGAGGTTCCGATCCGCGCGCAATATCTGCGCGTGCTGTTTGCGGAGCTGACCCGCATCTGCAACCACATGCTCAACATGGGCAGCCACGTGATGGACGTGGGCGCGATGACGCCGAACCTGTGGCTGTTCGAAATCCGCGAGGATTGCCTCAACTTCTTCGAGCGGGCCTCCGGCGCGCGCATGCACAGCGCCTGGTATCGCCCCGGCGGCGTGCATCAGGACGTGCCGCTCAAGCTGCTCACCGACATCGCCGACTGGCTCGACACGCGCCTGCCCGAACTGTTCGGGGACGCGATGAGCCTGGTGATCGACAACCGCATCTTCAAGCAGCGCAATGTCGATATCGCGCTGGTGAACAAGGAAGACGCGCTGCGCTGGGGTTTCTCCGGCCCGATGATCCGCGCCGCGGGCATCCCGTGGGACATCCGCAAGAGCCAGCCCTACGACGTGTATGATCGGATGGATTTCGAAATCCCCATCGGCACCAATTCCGATTGCTACGACCGGTTCATGGTCCGCGTGGAGGAAGTGTATCAGTCGGCCCGGATCATGAAGCAGTGCCTGGCCGAAATGCCCGAAGGCCCGATCGCCAGCAGCGACCGCAAGGTCGTCCCCCCCAAGCGCGGCGAAATGAAGAGCTCGATGGAGGCGCTGATCCATCACTTCAAGCTCTACACCGAAGGGTTCCACGTGCCGGCGGGTGAAGTCTACGTCGCCACCGAAAGCCCCAAGGGCGAATTCGGCGTCTATCTGGTGAGCGACGGCAGCAACAAGCCATACCGCTGCAAGATTCGCCCGACCGCCTTCAGCCACCTCCAGGCGATGGACTTCATGAGCAAGGGCCACATGCTGCCCGACGCGACCGCCATCCTCGGCGCGATCGACGTGGTGTTCGGGGAGTGCGACCGGTGA
PROTEIN sequence
Length: 404
MTMQLEQSPTTGDEVITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLAMEYSYVLAIEKLLNIEVPIRAQYLRVLFAELTRICNHMLNMGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAWYRPGGVHQDVPLKLLTDIADWLDTRLPELFGDAMSLVIDNRIFKQRNVDIALVNKEDALRWGFSGPMIRAAGIPWDIRKSQPYDVYDRMDFEIPIGTNSDCYDRFMVRVEEVYQSARIMKQCLAEMPEGPIASSDRKVVPPKRGEMKSSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR*