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SCNpilot_expt_1000_bf_scaffold_8846_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8846_curated_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..693)
DNA (693bp) protein (231aa)
NADH:ubiquinone oxidoreductase subunit L {ECO:0000313|EMBL:KHK91598.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
NADH-quinone oxidoreductase subunit L n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIM1_9SPHN rbh
NADH dehydrogenase I subunit L (EC:1.6.5.3); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_2
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(814..1119)
DNA (306bp) protein (102aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZK3_9SPHN
NADH dehydrogenase I subunit K (EC:1.6.5.3); K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
SCNpilot_expt_1000_bf_scaffold_8846_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1288..1878)
DNA (591bp) protein (197aa)
NADH-quinone oxidoreductase subunit J n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRG5_9SPHN rbh
NADH-quinone oxidoreductase subunit J {ECO:0000313|EMBL:GAD47954.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
NADH dehydrogenase I subunit J; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
SCNpilot_expt_1000_bf_scaffold_8846_curated_4
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2376..3422)
DNA (1047bp) protein (349aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y4G3_9SPHN rbh
NADH dehydrogenase I subunit H (EC:1.6.5.3); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3535..4719)
DNA (1185bp) protein (395aa)
NADH-quinone oxidoreductase chain 3 {ECO:0000313|EMBL:AKH41684.1}; EC=1.6.5.11 {ECO:0000313|EMBL:AKH41684.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
NADH dehydrogenase I subunit G n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WIX2_9SPHN
NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
SCNpilot_expt_1000_bf_scaffold_8846_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5510..6820)
DNA (1311bp) protein (437aa)
NADH-quinone oxidoreductase chain 1 {ECO:0000313|EMBL:AKH41686.1}; EC=1.6.5.11 {ECO:0000313|EMBL:AKH41686.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
NADH-quinone oxidoreductase subunit F n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZK7_9SPHN rbh
NADH dehydrogenase I subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7017..7685)
DNA (669bp) protein (223aa)
NADH-quinone oxidoreductase chain 2 {ECO:0000313|EMBL:AKH41687.1}; EC=1.6.5.11 {ECO:0000313|EMBL:AKH41687.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
NADH dehydrogenase I subunit E (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit E n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRG7_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7894..9105)
DNA (1212bp) protein (404aa)
NADH-quinone oxidoreductase subunit D n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HIP3_9SPHN rbh
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
NADH dehydrogenase I subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9102..9908)
DNA (807bp) protein (269aa)
NADH-quinone oxidoreductase subunit C 1 {ECO:0000313|EMBL:AKH41689.1}; EC=1.6.5.11 {ECO:0000313|EMBL:AKH41689.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7T9_9SPHN rbh
nuoC; NADH-quinone oxidoreductase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_10
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9910..10182)
DNA (273bp) protein (91aa)
NADH-quinone oxidoreductase subunit B n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00036F96B6
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
nuoB; NADH-quinone oxidoreductase subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
SCNpilot_expt_1000_bf_scaffold_8846_curated_11
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10440..10814)
DNA (375bp) protein (125aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
NADH-quinone oxidoreductase subunit A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRH3_9SPHN
NADH dehydrogenase I subunit A (EC:1.6.5.3); K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
SCNpilot_expt_1000_bf_scaffold_8846_curated_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11046..12242
DNA (1197bp) protein (399aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO55456.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acetyl-CoA C-acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USQ5_9SPHN rbh
Acetyl-CoA C-acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
SCNpilot_expt_1000_bf_scaffold_8846_curated_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12412..12882)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y4H1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47966.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8846_curated_14
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13788..13922
DNA (135bp) protein (45aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
glycolate reductase; K00015 glyoxylate reductase [EC:1.1.1.26]
2-hydroxyacid dehydrogenase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B60AE5
SCNpilot_expt_1000_bf_scaffold_8846_curated_15
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14382..14729
DNA (348bp) protein (116aa)
Ammonium transporter n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIL0_9SPHN
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
ammonium transporter; K03320 ammonium transporter, Amt family
Displaying 15 items

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