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SCNpilot_expt_1000_bf_scaffold_8110_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2582..3232)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator RutR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 216.0
  • Bit_score: 408
  • Evalue 3.40e-111
HTH-type transcriptional regulator RutR {ECO:0000313|EMBL:EYR80906.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 216.0
  • Bit_score: 408
  • Evalue 4.70e-111
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 88.6
  • Coverage: 211.0
  • Bit_score: 381
  • Evalue 1.40e-103
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 651
ATGGCATTACCGAGGGCGGCCAGGACTCAGCGGCGCACGCGCATTCAGGAAGCCAAGGAAGAGCAGATCCTCGAAGCGGCGCTGGAGGTCTTCTCGCTGCACGGCTTCCGCGGTGCGACGGTGGACCAGATCGCCGAGGTGGCCGGCATGTCCAAGCCGAACCTGCTCTATTATTTCCGCACCAAGGAGGCGATGCACCGGGCGCTGATCACCCGTGTGCTCGACACCTGGCTCGATCCGCTGCGCGAGTTCGATGCGGGCGGCAACCCGGTCTCGGAGATCCGCAGCTACATCCGGCGCAAGCTGGAGATGGCGCGCGATTTCCCGCGCGAAAGCCGGCTCTTCGCCAACGAGATCCTGCAGGGCGCGCCGAATATCGAGGACGAGCTGAAGGGGCCGCTGAAGGCGTTGGTGGACGAGAAGGCGGAGGTCATCCGCAGCTGGGCGAAGGCCGGCAAGATCGCGCAATGCGATCCCTATCACCTGATCTTCTCGATCTGGTCGACGACGCAGCATTATGCCGACTTCGACGTGCAGGTGCGTGCCGTCCTGGGGCAGGATCATTCCGGCGAGGGGCGTTTCGAGGATGCGGCGCGCTTTCTCGAACAGCTCTTCGTCACCGGGCTGAACATCAGCGGGCAGCCGGCGTGA
PROTEIN sequence
Length: 217
MALPRAARTQRRTRIQEAKEEQILEAALEVFSLHGFRGATVDQIAEVAGMSKPNLLYYFRTKEAMHRALITRVLDTWLDPLREFDAGGNPVSEIRSYIRRKLEMARDFPRESRLFANEILQGAPNIEDELKGPLKALVDEKAEVIRSWAKAGKIAQCDPYHLIFSIWSTTQHYADFDVQVRAVLGQDHSGEGRFEDAARFLEQLFVTGLNISGQPA*