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SCNpilot_expt_1000_bf_scaffold_8110_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8110_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..665
DNA (663bp) protein (221aa)
Dihydropyrimidine dehydrogenase {ECO:0000313|EMBL:KDP74869.1}; EC=1.3.1.1 {ECO:0000313|EMBL:KDP74869.1};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
dihydropyrimidine dehydrogenase subunit B n=1 Tax=Rhizobium giardinii RepID=UPI00035F54A6 rbh
putative dihydropyrimidine dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_8110_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(856..1494)
DNA (639bp) protein (213aa)
Protein ExoD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C9W4_9RHIZ rbh
ABC-type transport system permease component {ECO:0000313|EMBL:EYR80908.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
exoD; Protein ExoD
SCNpilot_expt_1000_bf_scaffold_8110_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1523..2578
DNA (1056bp) protein (352aa)
Membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPR0_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:EYR80907.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_8110_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2582..3232)
DNA (651bp) protein (217aa)
HTH-type transcriptional regulator RutR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT8_9RHIZ
HTH-type transcriptional regulator RutR {ECO:0000313|EMBL:EYR80906.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_8110_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3508..4758
DNA (1251bp) protein (417aa)
N-carbamoyl-L-amino acid hydrolase AmaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU84_9RHIZ rbh
N-carbamoyl-L-amino acid hydrolase AmaB {ECO:0000313|EMBL:EYR80905.1}; EC=3.5.1.87 {ECO:0000313|EMBL:EYR80905.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amidase rbh
SCNpilot_expt_1000_bf_scaffold_8110_curated_6
unknown

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comp(5211..5522)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8110_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5748..6803
DNA (1056bp) protein (352aa)
D-hydantoinase/dihydropyrimidinase Dht {ECO:0000313|EMBL:EYR80904.1}; EC=3.5.2.2 {ECO:0000313|EMBL:EYR80904.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
D-hydantoinase/dihydropyrimidinase n=1 Tax=Rhizobium sp. RepID=L0NGR0_RHISP rbh
hydA; dihydropyrimidinase rbh
SCNpilot_expt_1000_bf_scaffold_8110_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6803..7177
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDS7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80903.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_8110_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7392..7601
DNA (210bp) protein (70aa)
ABC transporter-like n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY43_9RHIZ
ABC transporter-like protein {ECO:0000313|EMBL:EYR80901.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
Displaying 9 items

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