ggKbase home page

SCNpilot_expt_1000_bf_scaffold_11580_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 3889..4341

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S6 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQT5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.7
  • Coverage: 150.0
  • Bit_score: 304
  • Evalue 8.10e-80
  • rbh
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.7
  • Coverage: 150.0
  • Bit_score: 304
  • Evalue 1.10e-79
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 similarity KEGG
DB: KEGG
  • Identity: 87.0
  • Coverage: 154.0
  • Bit_score: 263
  • Evalue 3.80e-68

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 453
ATGGCTCTCTACGAACATGTATTCCTGGCCCGCCAGGACGTGTCCGCCCAGCAGGTCGACGCTCTCGTCGAACAGTACAAGGGCGTGATCGAAGCACACGGCGGCAAGGTCGGCCGGGTCGAGAACTGGGGCCTCAAGTCCCTGACCTACCGCATCAAGAAGAACCGCAAGGCGCATTACGCGCTGATGGACATCGACGCTCCGGCCGCCGCCATCCACGAGATGGAACGCCAGATGCGCATCAACGAAGACGTTCTTCGCTACATGACCATCGCCGTCGAGGCCCACGAAGAAGGCCCGTCCGCGATGATGCAGAAGCGCGACCGCGACGACCGTCCGCGCCGCGATGGCGACGACCGCGGCCCGCGCCGCGATTTCGGCGACCGTCCGCGCCGCGACTTCGGCGACCGCCCGCCGCGTGGCGACCGTCCGGCCCGCGAAGACCGCGCGTAA
PROTEIN sequence
Length: 151
MALYEHVFLARQDVSAQQVDALVEQYKGVIEAHGGKVGRVENWGLKSLTYRIKKNRKAHYALMDIDAPAAAIHEMERQMRINEDVLRYMTIAVEAHEEGPSAMMQKRDRDDRPRRDGDDRGPRRDFGDRPRRDFGDRPPRGDRPAREDRA*