ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1661_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2142..2873)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.5
  • Coverage: 243.0
  • Bit_score: 440
  • Evalue 1.50e-120
  • rbh
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.5
  • Coverage: 243.0
  • Bit_score: 440
  • Evalue 2.10e-120
ftsJ; cell division protein ftsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] similarity KEGG
DB: KEGG
  • Identity: 87.2
  • Coverage: 243.0
  • Bit_score: 430
  • Evalue 2.90e-118
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 732
ATGACCAAGCCCCCCGTCGGCGGCAACCGCACCGGCCGCAAGCTCGGCCAGAAGGTCAGGAAGACGAAGCTCAAGGCCTCCTCGCGCCGCTGGCTCGAGCGCCACATCAACGATCCCTACGTGCAGCGCGCCAAGCTGGAGGGCTACCGCGCCCGCGCGGCCTTCAAGCTGCTGGAGATCGACGAGAAGCACAACATCCTTGCCGGCGCCAGGCGCATCATCGACCTCGGCGCGGCGCCCGGAAGCTGGTCGCAGATCGCCGCCAAGGTGACGGATTCGACGGATGCGGATCCGCGCGTCGCGGCCATCGACTTCCTGGAGATGGATCCGCTGCCCGGCGTCACCATTCTCCAGATGGACTTCCTCGATCCGGAGGCGCCGCACAAGCTCATCGAGGCGGTCGGCGGCACGCCGAACCTCGTCATATCGGACATGGCGGCGCCCACCACCGGCCACCGCCAGACGGACCACCTGCGCACCATGCACCTGTGCGAGGTCGCCGCGCACTTCGCCGTCGAGGTGCTGGCCGAAGGCGGGCATTTCCTGGCCAAGACCTTCCAGGGCGGCACGGAACGCGACCTCCTCAACATGCTCAAGCAGAATTTCAGGCAGGTCATCCATGTGAAGCCGGGCGCCTCGCGCGCCGAATCGGTCGAGATGTTCCTGCTCGCCAAGGGCTTCAAGGGCCGCAAGGCGCGAAGCGAGGCGGCGGAAGCGGACGAGGAAGCCTGA
PROTEIN sequence
Length: 244
MTKPPVGGNRTGRKLGQKVRKTKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEIDEKHNILAGARRIIDLGAAPGSWSQIAAKVTDSTDADPRVAAIDFLEMDPLPGVTILQMDFLDPEAPHKLIEAVGGTPNLVISDMAAPTTGHRQTDHLRTMHLCEVAAHFAVEVLAEGGHFLAKTFQGGTERDLLNMLKQNFRQVIHVKPGASRAESVEMFLLAKGFKGRKARSEAAEADEEA*