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SCNpilot_expt_1000_bf_scaffold_1661_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1661_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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155..1564
DNA (1410bp) protein (470aa)
Putative transport protein HsrA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESB2_9RHIZ rbh
Putative transport protein HsrA {ECO:0000313|EMBL:EYR80090.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
probabable permease rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1759..2142)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUT0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80089.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1661_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2142..2873)
DNA (732bp) protein (244aa)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD4_9RHIZ rbh
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsJ; cell division protein ftsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2870..4417)
DNA (1548bp) protein (516aa)
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GppA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQA3_9RHIZ rbh
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GppA {ECO:0000313|EMBL:EYR80087.1}; EC=3.6.1.40 {ECO:0000313|EMBL:EYR80087.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ppx1; exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_trna_1
unknown

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4655..4725
DNA (71bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_1661_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4827..5009
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:AHK43496.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VH64_9RHIZ
hypothetical protein; K09946 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1661_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5049..5597)
DNA (549bp) protein (183aa)
HTH-type transcriptional regulator PuuR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2D1_9RHIZ rbh
HTH-type transcriptional regulator PuuR {ECO:0000313|EMBL:EYR82980.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, XRE family with cupin sensor rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5837..7174
DNA (1338bp) protein (446aa)
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR0_9RHIZ rbh
Omega-amino acid--pyruvate aminotransferase {ECO:0000313|EMBL:EYR82979.1}; EC=2.6.1.18 {ECO:0000313|EMBL:EYR82979.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Aminotransferase class-III; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18] rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7232..7591
DNA (360bp) protein (120aa)
Putative molybdenum-pterin binding protein MopB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUZ4_9RHIZ
Putative molybdenum-pterin binding protein MopB {ECO:0000313|EMBL:EYR82978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1661_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7595..8668)
DNA (1074bp) protein (358aa)
Molybdenum import ATP-binding protein ModC {ECO:0000256|HAMAP-Rule:MF_01705}; EC=3.6.3.29 {ECO:0000256|HAMAP-Rule:MF_01705};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Molybdenum ABC transporter, ATP-binding protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JP94_9RHIZ rbh
modC; molybdate ABC transporter, ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8665..9366)
DNA (702bp) protein (234aa)
Molybdenum transport system permease protein ModB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7N6_9RHIZ rbh
Molybdenum transport system permease protein ModB {ECO:0000313|EMBL:EYR82976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
modB; molybdate ABC transporter permease; K02018 molybdate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9543..10316)
DNA (774bp) protein (258aa)
Molybdate-binding periplasmic protein ModA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNI6_9RHIZ rbh
Molybdate-binding periplasmic protein ModA {ECO:0000313|EMBL:EYR82975.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
modA; ABC transporter substrate-binding protein (molybdate); K02020 molybdate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10485..12221)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXK7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR82974.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12576..12902
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR82973.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BXP5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1661_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12902..13270
DNA (369bp) protein (123aa)
Response regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G2_9RHIZ
Response regulator {ECO:0000313|EMBL:EYR82972.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_1661_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13267..14115
DNA (849bp) protein (283aa)
Chemotaxis protein CheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN18_9RHIZ
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheA; Chemotaxis protein histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
SCNpilot_expt_1000_bf_scaffold_1661_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14112..15245
DNA (1134bp) protein (378aa)
Chemotaxis protein CheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN18_9RHIZ rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheA; Chemotaxis protein histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] rbh
SCNpilot_expt_1000_bf_scaffold_1661_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15242..15760
DNA (519bp) protein (173aa)
Chemotaxis signal transduction protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQL7_9RHIZ rbh
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EYR82970.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheW; chemotaxis protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_1000_bf_scaffold_1661_curated_18
unknown

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comp(16017..16466)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1661_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17273..17425
DNA (153bp) protein (51aa)
Putative sensory transducer protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDE9_9RHIZ
Methyl-accepting chemotaxis citrate transducer {ECO:0000313|EMBL:EYR82969.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpB; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1661_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17935..18240
DNA (306bp) protein (102aa)
Chemotaxis protein methyltransferase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G5_9RHIZ
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
Displaying 21 items

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