name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1661_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
155..1564
|
Putative transport protein HsrA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESB2_9RHIZ
rbh
Putative transport protein HsrA {ECO:0000313|EMBL:EYR80090.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
probabable permease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1759..2142)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUT0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80089.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2142..2873)
|
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD4_9RHIZ
rbh
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsJ; cell division protein ftsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2870..4417)
|
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GppA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQA3_9RHIZ
rbh
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GppA {ECO:0000313|EMBL:EYR80087.1}; EC=3.6.1.40 {ECO:0000313|EMBL:EYR80087.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ppx1; exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_trna_1
unknown
|
Not on your lists |
4655..4725
|
transferRNA
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4827..5009
|
Uncharacterized protein {ECO:0000313|EMBL:AHK43496.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VH64_9RHIZ
hypothetical protein; K09946 hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5049..5597)
|
HTH-type transcriptional regulator PuuR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2D1_9RHIZ
rbh
HTH-type transcriptional regulator PuuR {ECO:0000313|EMBL:EYR82980.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, XRE family with cupin sensor
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5837..7174
|
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR0_9RHIZ
rbh
Omega-amino acid--pyruvate aminotransferase {ECO:0000313|EMBL:EYR82979.1}; EC=2.6.1.18 {ECO:0000313|EMBL:EYR82979.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7232..7591
|
Putative molybdenum-pterin binding protein MopB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUZ4_9RHIZ
Putative molybdenum-pterin binding protein MopB {ECO:0000313|EMBL:EYR82978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7595..8668)
|
Molybdenum import ATP-binding protein ModC {ECO:0000256|HAMAP-Rule:MF_01705}; EC=3.6.3.29 {ECO:0000256|HAMAP-Rule:MF_01705};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Molybdenum ABC transporter, ATP-binding protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JP94_9RHIZ
rbh
modC; molybdate ABC transporter, ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8665..9366)
|
Molybdenum transport system permease protein ModB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7N6_9RHIZ
rbh
Molybdenum transport system permease protein ModB {ECO:0000313|EMBL:EYR82976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
modB; molybdate ABC transporter permease; K02018 molybdate transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9543..10316)
|
Molybdate-binding periplasmic protein ModA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNI6_9RHIZ
rbh
Molybdate-binding periplasmic protein ModA {ECO:0000313|EMBL:EYR82975.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
modA; ABC transporter substrate-binding protein (molybdate); K02020 molybdate transport system substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10485..12221)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXK7_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR82974.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12576..12902
|
Uncharacterized protein {ECO:0000313|EMBL:EYR82973.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BXP5_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12902..13270
|
Response regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G2_9RHIZ
Response regulator {ECO:0000313|EMBL:EYR82972.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13267..14115
|
Chemotaxis protein CheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN18_9RHIZ
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheA; Chemotaxis protein histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14112..15245
|
Chemotaxis protein CheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN18_9RHIZ
rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheA; Chemotaxis protein histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15242..15760
|
Chemotaxis signal transduction protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQL7_9RHIZ
rbh
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EYR82970.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheW; chemotaxis protein; K03408 purine-binding chemotaxis protein CheW
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_18
unknown
|
Not on your lists |
comp(16017..16466)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17273..17425
|
Putative sensory transducer protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDE9_9RHIZ
Methyl-accepting chemotaxis citrate transducer {ECO:0000313|EMBL:EYR82969.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpB; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
|
|
SCNpilot_expt_1000_bf_scaffold_1661_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17935..18240
|
Chemotaxis protein methyltransferase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G5_9RHIZ
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
|