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SCNpilot_expt_1000_bf_scaffold_1661_curated_16

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 14112..15245

Top 3 Functional Annotations

Value Algorithm Source
Chemotaxis protein CheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN18_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.2
  • Coverage: 377.0
  • Bit_score: 678
  • Evalue 4.00e-192
  • rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.2
  • Coverage: 377.0
  • Bit_score: 678
  • Evalue 5.60e-192
cheA; Chemotaxis protein histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] similarity KEGG
DB: KEGG
  • Identity: 87.3
  • Coverage: 377.0
  • Bit_score: 633
  • Evalue 6.00e-179
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1134
ATGATGGACCGCGTCGGCGAGCTGGTCATCGCCCAGTCCCGCCTCACCCAGCTTGCGGGCGCGGCGGCCGACCTTGGCCTGCGCTCCGTCTCGGAGGAGATCGAGCGCCTTTCCGGCGAATTGCGCGACACGATGATGGTGCTGCGCATGATGCCGGTCGCCAGCCTCTTCAGCCGCTTCCGCCGCCTCGTGCACGACCTGTCACGCGAGACCGGCAAGGAAATCGAACTCATCACCGAGGGCGAGAGCACGGAAGTCGACAAGACGGTCATCGACCGCCTCGCCGATCCGCTCGTCCACCTCGTGCGCAACTCCATCGACCACGGCCTCGAAAAGCCCGAGGAGCGCATCGCCGCCGGCAAGGACGCGAAGGGCAAGGTGCTCCTCTCGGCCCACCAGACGGGCGGCGAGGTCATCATCACCATCAAGGACGACGGCCGCGGCATCAACCGCGAGCGCGTGCGCGCCAAGGCCGAGGCCTCGGGCCTGATCCAGCCGGGCCAGTCGCTCTCCGACCCGGAGCTGCTGCAGCTCATCTTCCAGCCGGGCTTCTCCACCGCCCAGCAGGTCACCAACCTCTCGGGCCGCGGCGTCGGCATGGATGTGGTGAAGAAGACGGTGGAAGCGCTGCGCGGGGCGATCGACATCGCCAGCAAGCCGGGCGACGGCTCGGAAGTTTCGCTGCGCATCCCGCTGACACTCGCCATCATCGACGGCCTGCTCGTGCGCGTCGGAGGGGGCTGCTACGTCATCCCGCTCTCGGCGGTCGAGGAGTGCCTGGAGCTCTCGCTGGAAGACGACCTGCGCTCGCGCGGGCGCTCCTTCATCTCGCTGCGCGACAGCCTCGTGCCGTTCCTGCGCCTGCGCGAGCTCTTCCGCACCGGCACCCAGCCCGATCCGCACCAGAAGGTCGTCGTCATCTCGACCGGCTCGGAGCGCGTCGGCCTCGTCGTCGACCAGATCATCGGCGACCACCAGACGGTCATCAAATCCATGTCCAAGCTGCACCGTGGCGTCGCCACCTTCTCGGGCGCGACCATTCTCGGGGACGGCAGCGTCGCGCTGATCCTCGACGTCACCCACCTGGTCGCGGCCGGACAGCACCAGGAGGCGCAAATGCGGGCGGCAGGATGA
PROTEIN sequence
Length: 378
MMDRVGELVIAQSRLTQLAGAAADLGLRSVSEEIERLSGELRDTMMVLRMMPVASLFSRFRRLVHDLSRETGKEIELITEGESTEVDKTVIDRLADPLVHLVRNSIDHGLEKPEERIAAGKDAKGKVLLSAHQTGGEVIITIKDDGRGINRERVRAKAEASGLIQPGQSLSDPELLQLIFQPGFSTAQQVTNLSGRGVGMDVVKKTVEALRGAIDIASKPGDGSEVSLRIPLTLAIIDGLLVRVGGGCYVIPLSAVEECLELSLEDDLRSRGRSFISLRDSLVPFLRLRELFRTGTQPDPHQKVVVISTGSERVGLVVDQIIGDHQTVIKSMSKLHRGVATFSGATILGDGSVALILDVTHLVAAGQHQEAQMRAAG*