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SCNpilot_expt_1000_bf_scaffold_11619_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 954..1928

Top 3 Functional Annotations

Value Algorithm Source
Pilus assembly protein CpaE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2C1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.4
  • Coverage: 294.0
  • Bit_score: 505
  • Evalue 3.00e-140
Pilus assembly protein CpaE {ECO:0000313|EMBL:EYR80340.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.4
  • Coverage: 294.0
  • Bit_score: 505
  • Evalue 4.20e-140
cpaE1; putative response regulator protein; K02282 pilus assembly protein CpaE similarity KEGG
DB: KEGG
  • Identity: 75.6
  • Coverage: 295.0
  • Bit_score: 466
  • Evalue 8.30e-129

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 975
ATGAGCACGGTCGACTACACCTTCACGAACGAGACCGCGCGCGGGCCGGCGGACGAGGCGGTCCGGCCGGCGGACCTCGAGGCCGTGCGCCCGCTGCCGCGCATCTCCGTGCACGCCTTCTGCGAGAGCGAGGAAATGGTGCACGCGATGGAGCGGTGCGGCCAGGACCGCCGCATGGCGAAGGTGAGCCTGCGCATTTCGAGCGCGAGCGTCGCGGCGGCGGCCAACATGTTCGCCAGCGCCCCGACGCCGAACCTCCTGATCCTGGAAACCTCGACGGAGCCGAGCGCCATCATGGCCGAGCTCGCCCCGCTCGCCGAGGTGTGCGATCCGTCCACCAAGGTCATCGTCGTCGGACGCTACAACGACATCTCGCTCTATCGCGAGCTGATCCGCAACGGCATTTCCGAATACATGGTCGGCCCCGTCGGCATGGCCGAGGTGCTGAACGCCATGGCGGCGATCTTCATCGATCCGGAAGCCGAGCCGCTCGGCCGCTCCATTGCGTTCATCGGCGCCAAGGGCGGCTCCGGCTCCTCGACCGTCGCGCACAATTGCGCCTTCGACATCTCCAACCTCTTCCAGACCGAGGTGATCCTCGCCGATCTCGACCTGCCCTACGGCACAGCCAATATCGACTTCGACCAGGACCCGCCGCAGGGCATCTCCGAGGCGATCTACGCGCCGGAGCGTCTCGACGAGGTCTTCCTCGACCGCCTGCTGACGAAGTGCTCCGAGCACCTTTCACTGCTCGCGGCACCCTCCATGCTCGACCGCGCCTACGATCTCGAGCGCGGCTCCTTCCAGCCGGTCCTCGAAGTGCTCCAGCGCAGCGCGCCGGTGACGGTCCTCGACGTGCCGCACGCCTGGTCGGAATGGACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTGCCGGACCTTGCGAACCTGCGCAACGCCAAGAACATGCTCGACGCGCTGA
PROTEIN sequence
Length: 325
MSTVDYTFTNETARGPADEAVRPADLEAVRPLPRISVHAFCESEEMVHAMERCGQDRRMAKVSLRISSASVAAAANMFASAPTPNLLILETSTEPSAIMAELAPLAEVCDPSTKVIVVGRYNDISLYRELIRNGISEYMVGPVGMAEVLNAMAAIFIDPEAEPLGRSIAFIGAKGGSGSSTVAHNCAFDISNLFQTEVILADLDLPYGTANIDFDQDPPQGISEAIYAPERLDEVFLDRLLTKCSEHLSLLAAPSMLDRAYDLERGSFQPVLEVLQRSAPVTVLDVPHAWSEWTXXXXXXXXXXXXXPCRTLRTCATPRTCSTR*