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SCNpilot_expt_1000_bf_scaffold_11619_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 227..913

Top 3 Functional Annotations

Value Algorithm Source
Pilus assembly protein CpaD n=1 Tax=Rhizobium sp. RepID=L0NM73_RHISP similarity UNIREF
DB: UNIREF100
  • Identity: 57.9
  • Coverage: 228.0
  • Bit_score: 267
  • Evalue 1.30e-68
Pilus assembly protein CpaD {ECO:0000313|EMBL:CCF21906.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.9
  • Coverage: 228.0
  • Bit_score: 267
  • Evalue 1.80e-68
pilus biogenesis lipoprotein CpaD; K02281 pilus assembly protein CpaD similarity KEGG
DB: KEGG
  • Identity: 59.4
  • Coverage: 212.0
  • Bit_score: 247
  • Evalue 4.30e-63

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Taxonomy

Rhizobium sp. → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 687
ATGGCAAACGAAAAGCACACCACCCGCGCAAAGAACGGCCGCATACTCGCCCTTGCCGCCATGGCGGCGCTGACCGTGGCGCTTGCGGGCTGCGCCGACCGCAGGGCGACGGGCTCCCTGCCCGACGACTACCGCACGCGCCATCCGATCGTCGTCGGCGAGCAGGAGCGCACCATCGACATCCCGGTCGCCACCGGCGCAAGCGAGTTGACGCGCGGCCAGAGCGAGGTGATCGCGGGTTTCGCCTCTGGCTACTCGGCCGAATCGTCGGGCATGTTCCGCATCATCCTGCCGCGCGGCGCGCGTAACGACGCGGCGACCTCGCTCGCCGGCCGGCAGATCCGCAAGCTGCTCGCGCGCCACGGCATTCCCGCGCGCAAGGTGATGATCGAGAATTATTCGGCGGGCGATCCGGCCGAGGCCGCGCCGATCCGCCTCAGCTACTTCGCCATCACGGCTTCGACGCAGGCCTGCGGCCAGTGGCCGGAGGATCTCGCGCTCAACACCTTCGAGAACAAGAACTACTACAATTTCGGCTGCGCCACGCAGAACAACCTCGCCGCCCAGATCGCCGATCCGAACGATCTTCTCGGCCCGCGCCGCATGACGCCGGCGGACGCCACCCAGCGCGGCAAGGCGCTCGAGCGCTATCGCGGCGCCTATACCGAACTGAAGGACAACATCTGA
PROTEIN sequence
Length: 229
MANEKHTTRAKNGRILALAAMAALTVALAGCADRRATGSLPDDYRTRHPIVVGEQERTIDIPVATGASELTRGQSEVIAGFASGYSAESSGMFRIILPRGARNDAATSLAGRQIRKLLARHGIPARKVMIENYSAGDPAEAAPIRLSYFAITASTQACGQWPEDLALNTFENKNYYNFGCATQNNLAAQIADPNDLLGPRRMTPADATQRGKALERYRGAYTELKDNI*