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SCNpilot_expt_1000_bf_scaffold_8304_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3004..4140)

Top 3 Functional Annotations

Value Algorithm Source
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNX9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.7
  • Coverage: 375.0
  • Bit_score: 614
  • Evalue 9.20e-173
  • rbh
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR78266.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR78266.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 375.0
  • Bit_score: 614
  • Evalue 1.30e-172
AMP-dependent synthetase and ligase (EC:5.1.1.11) similarity KEGG
DB: KEGG
  • Identity: 67.5
  • Coverage: 381.0
  • Bit_score: 514
  • Evalue 4.10e-143
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1137
GTGCCGCGGCTGGTGACGGGCGCGGCGGGCACCTTCGAAGCGGGACTGGAGGCCGCGCCATTTGCCGGCGAAGCTTTTCCGGACACCGATCTTGCGGCCCTGATCTATACCTCCGGTTCGACCGGCGTGCCGAAGGGCGTGATGCTGGCTCATGAGAACATGGATGCGGCCGCACGCTCGATCTCGGCCTATCTCGGCAACACCGCGGCCGACACGATCCTCGTCGTGCTGCCGATGTCCTTCGGCTACGGGCTCAACCAGCTCGTGACCGCCATGCTTTGCGGCGCGACGCTCGTCATCGAAAAATCCTTCGCCTTTCCGCAGGCGGTCTTCGAGAGGATCCGCGACGAGCGCGTCACCGGCTTTGCGCTGGTGCCGGCCATGGCCGCCATGATGATGCAGGCGCGCGAACTCGATCCGTCGCTCTTTGCAAGCCTGCGCTATGTCACGAGCGCGGCCGCGCCCCTGCCGCCCGCCCATCTCGACTGGCTGCGCGCCTTCCTGCCGCATGCCCGCCTTTTCTGCATGTACGGCCAGACCGAGTGCACCCGCGCGACCTATCTCCCGCCGGAGGAGATCGACGCCCGGCGGGGCTCGGTCGGCATCGCCATTCCCGGTCTGCAGGCCGAGGTGGTGGACGAGGCCGGACTGGCCGTGCCGCCGGGCGCGGTCGGCGAACTGGTGGTGAGCGGCCCGAACGTGATGCGGGGCTACTGGAAAAACGAGGCGGCAACCCGCAAGGCACTTCGGCCCGATCCGAATACCGGCACGATCCGCCTTCATACCGGCGACCTCTTCACGGCGGACGCCGACGGCTATCTCACCTTCGTCGCCCGCACCGACGACATCATCAAGTCGCGCGGCGAGAAGGTTGCGCCGAAGGCGGTGGAGGACGTGCTGCACCGCATGCCGGGGGTCGCGGAGGCGCTCGTCGTCGGCGTGCCGCACGAGGTTCTCGGCGAGGCCGTGAAGGCGCTCGTCGTCGCCACCGACCCGGCGCTGACGGAGCGGGACGTCATGCGCTTCTGCGCGCAGAACCTGGAGGACCACATGGTCCCGAAGATCGTCGAATTCCGGCAGTTCCTGCCGAAAACCGAATCCGGCAAGGCCAGCCGCAGGCTGGCCGCCGCCCTCTGA
PROTEIN sequence
Length: 379
VPRLVTGAAGTFEAGLEAAPFAGEAFPDTDLAALIYTSGSTGVPKGVMLAHENMDAAARSISAYLGNTAADTILVVLPMSFGYGLNQLVTAMLCGATLVIEKSFAFPQAVFERIRDERVTGFALVPAMAAMMMQARELDPSLFASLRYVTSAAAPLPPAHLDWLRAFLPHARLFCMYGQTECTRATYLPPEEIDARRGSVGIAIPGLQAEVVDEAGLAVPPGAVGELVVSGPNVMRGYWKNEAATRKALRPDPNTGTIRLHTGDLFTADADGYLTFVARTDDIIKSRGEKVAPKAVEDVLHRMPGVAEALVVGVPHEVLGEAVKALVVATDPALTERDVMRFCAQNLEDHMVPKIVEFRQFLPKTESGKASRRLAAAL*