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SCNpilot_expt_1000_bf_scaffold_8304_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8304_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..472
DNA (471bp) protein (157aa)
Phosphatidate cytidylyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET05_9RHIZ rbh
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EYR78116.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
SCNpilot_expt_1000_bf_scaffold_8304_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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559..1512
DNA (954bp) protein (318aa)
Guanidinobutyrase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHF7_9RHIZ rbh
Agmatinase {ECO:0000313|EMBL:EYR78111.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
agmatinase; K01480 agmatinase [EC:3.5.3.11] rbh
SCNpilot_expt_1000_bf_scaffold_8304_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1614..1952
DNA (339bp) protein (113aa)
Translation initiation inhibitor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTU2_9RHIZ
Translation initiation inhibitor {ECO:0000313|EMBL:EYR78104.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_8304_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2010..2138)
DNA (129bp) protein (43aa)
NH(3)-dependent NAD(+) synthetase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY09_9RHIZ
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_8304_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3004..4140)
DNA (1137bp) protein (379aa)
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNX9_9RHIZ rbh
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR78266.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR78266.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AMP-dependent synthetase and ligase (EC:5.1.1.11) rbh
SCNpilot_expt_1000_bf_scaffold_8304_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4523..4777)
DNA (255bp) protein (85aa)
Acyl carrier protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C841_9RHIZ
Acyl carrier protein {ECO:0000313|EMBL:EYR78265.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_8304_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4780..5952)
DNA (1173bp) protein (391aa)
Asparagine synthetase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQY5_9RHIZ rbh
Asparagine synthetase 1 {ECO:0000313|EMBL:EYR78264.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EYR78264.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
asparagine synthase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] rbh
SCNpilot_expt_1000_bf_scaffold_8304_curated_8
unknown

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6993..7736
DNA (744bp) protein (248aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8304_curated_9
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8014..9354
DNA (1341bp) protein (447aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK72898.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTW4_9RHIZ
lipopolysaccharide biosynthesis
Displaying 9 items

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