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SCNpilot_expt_1000_bf_scaffold_4405_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2..511)

Top 3 Functional Annotations

Value Algorithm Source
Glutamate--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C863_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.9
  • Coverage: 174.0
  • Bit_score: 322
  • Evalue 2.50e-85
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.9
  • Coverage: 174.0
  • Bit_score: 322
  • Evalue 3.50e-85
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] similarity KEGG
DB: KEGG
  • Identity: 84.7
  • Coverage: 170.0
  • Bit_score: 307
  • Evalue 2.00e-81

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGAGCACTTCCGGCATCCGCGTCCGCATCGCACCCTCCCCGACCGGCGAGCCGCATGTCGGCACCGCCTATATCGCGCTGTTCAACTACCTCTTTGCGAAAAAGAACAACGGCACCTTCATCCTGCGCATCGAGGACACGGACGCCACGCGCTCGACGCCGGAATTCGAACAGAAGGTGCTGGACGNNNNNNNNNNNNNNNNNNNNNNATGGTCGGAAGGCCCTGACATCGGCGGCCCCTACGGCCCCTACCGCCAGTCCGACCGCAAGGACATCTATCGTCCTTACGTCGACCAGATCGTCGCGAACGGCCATGGCTTCAAGTGTTTCTGCACGCCCGAGCGGCTGGAGAAGATGCGCGAGGAACAGCGCGCCGCCGGTAAGCCGCCGAAATACGACGGCCTGTGCCTGCATCTCTCGGCCGAGGAAGTGACGCGGCGCGTCGAGGCCGGCGAGCCGCATGTCGTGCGCATGAAGATCCCGACCGAGGGCTCCTGCAAGTTCGTCGAC
PROTEIN sequence
Length: 170
MSTSGIRVRIAPSPTGEPHVGTAYIALFNYLFAKKNNGTFILRIEDTDATRSTPEFEQKVLDXXXXXXXXWSEGPDIGGPYGPYRQSDRKDIYRPYVDQIVANGHGFKCFCTPERLEKMREEQRAAGKPPKYDGLCLHLSAEEVTRRVEAGEPHVVRMKIPTEGSCKFVD