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SCNpilot_expt_1000_bf_scaffold_4405_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4405_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..511)
DNA (510bp) protein (170aa)
Glutamate--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C863_9RHIZ
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
SCNpilot_expt_1000_bf_scaffold_4405_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(645..2417)
DNA (1773bp) protein (591aa)
Di-and tricarboxylate transporter {ECO:0000313|EMBL:EYR80588.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Di-and tricarboxylate transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNZ4_9RHIZ rbh
transporter rbh
SCNpilot_expt_1000_bf_scaffold_4405_curated_3
unknown

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2441..3001
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Rhizobium gallicum RepID=UPI0003678F8B
SCNpilot_expt_1000_bf_scaffold_4405_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2823..3575)
DNA (753bp) protein (251aa)
Integral membrane protein TerC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY29_9RHIZ rbh
Integral membrane protein TerC {ECO:0000313|EMBL:EYR80587.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Membrane protein TerC, possibly involved in tellurium resistance rbh
SCNpilot_expt_1000_bf_scaffold_4405_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3687..4367)
DNA (681bp) protein (227aa)
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR80586.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000364231B
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4405_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4499..5716
DNA (1218bp) protein (406aa)
Multidrug resistance protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEJ4_9RHIZ rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:EYR80585.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A rbh
SCNpilot_expt_1000_bf_scaffold_4405_curated_7
unknown

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comp(6010..6111)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4405_curated_8
unknown

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comp(6160..6297)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4405_curated_9
unknown

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comp(6316..6681)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4405_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6806..7378
DNA (573bp) protein (191aa)
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EYR80584.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative drug resistance transporter, EmrB/QacA subfamily
Putative drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A0Q8_RHIFH
SCNpilot_expt_1000_bf_scaffold_4405_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7657..8523
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDG2_9RHIZ rbh
Cytolysin, a secreted calcineurin-like phosphatase {ECO:0000313|EMBL:EYR80583.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4405_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8614..9657
DNA (1044bp) protein (348aa)
Regulatory protein LacI {ECO:0000313|EMBL:EYR80582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transcriptional regulatory protein, LacI family; K02529 LacI family transcriptional regulator rbh
Putative transcriptional regulatory protein, LacI family n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8Y2_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_4405_curated_13
unknown

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comp(9777..10130)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4405_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11238..11423
DNA (186bp) protein (62aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylA; xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FZK4_RHIML
Displaying 14 items

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