ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4405_curated_12

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 8614..9657

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein LacI {ECO:0000313|EMBL:EYR80582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.7
  • Coverage: 347.0
  • Bit_score: 568
  • Evalue 5.70e-159
putative transcriptional regulatory protein, LacI family; K02529 LacI family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 70.1
  • Coverage: 341.0
  • Bit_score: 454
  • Evalue 2.70e-125
  • rbh
Putative transcriptional regulatory protein, LacI family n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8Y2_RHISN similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 341.0
  • Bit_score: 454
  • Evalue 8.60e-125
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1044
ATGAGACCCACGGTTCACGATATCGCCGACAAGGCGGGCGTCAGCCTCGCCACGGTCGACCGCGTCCTGAACGACCGGCCGGGCGTGCGCGGCGTCACGCGCGCCAGGGTCGAGGCGGCGATCGCCGCGCTCGGCTATGTGCGCGACGTCGCGGCGGCGAACCTTGCCAAGGGCCGCGTCTATCCGCTCGTCTTCATCCTGCCGGAGGGCGACAATCCCTTCATGCGCGGGCTGGAGGCGGAGGTGCGCCGCGCCGGCCTCCATTCCGCCGCCGAGCGCACCCGCCTTTCCGTGGCGACGGTGCCGGCCTTCGACGCGGCGGCGCTGGCGAAGGCCATCGATGCCGCCATCGCCGGGGACGTTTCCGGCATCGCCGCCGTCGCCGTGGATGCGCCGGAAGTGTCCGACGCCATCGCCCGCGCGCACGCGGCCGGCATCCCCGTCGTCACCCTCGTTTCCGATCTTGCCGGCTCTGGCCGCGATCATTTCGTCGGTGTCGACAATATCGCCGCCGGCCGCACCGCCGGCAGCCTGATGGGCCGGTTCCTCGGCGGCCGGCCCGGCCCCGTCGCGGTGCTCGCCGGCTCCATGCGCGTGCGCGACCATGGCGAGCGTCTCGAAGGGTTTCTCGCCGCCATGTCGGCCATGCCGGAGCCCCGCGCCATCCTGCCGGTGCTGGAAGGGCAGGACGATCCGGAGCTTTCCTTCTCGCTGATCGCCGATTGCCTCGCCAAGGTGCCGGACCTTGCCGGCATCTACAGCCTCGGTGCCGGCAATCGCGGCCTCATCGCCGCGCTTTCGGCTGGGGGCAGGGGCGATCTCTGCGTGATCGTGCACGAGCTGACCGGCGAGACCCGGGCGGCGCTGGAAAGCGGCGTCGTCGATGCCGTGCTCAACCAGGATGCCGGCCACGAGGTGCGCAGCGCCATCCGCGTGCTGCGCGCCAAGGCGGACGGCCTGCCGGTCAACGCCGCGCAGGAGCGCATCCGCCTCGACATCTTCATCAAGGACAACCTCCCGGCCGACCCGGACGAGGAAAACTAG
PROTEIN sequence
Length: 348
MRPTVHDIADKAGVSLATVDRVLNDRPGVRGVTRARVEAAIAALGYVRDVAAANLAKGRVYPLVFILPEGDNPFMRGLEAEVRRAGLHSAAERTRLSVATVPAFDAAALAKAIDAAIAGDVSGIAAVAVDAPEVSDAIARAHAAGIPVVTLVSDLAGSGRDHFVGVDNIAAGRTAGSLMGRFLGGRPGPVAVLAGSMRVRDHGERLEGFLAAMSAMPEPRAILPVLEGQDDPELSFSLIADCLAKVPDLAGIYSLGAGNRGLIAALSAGGRGDLCVIVHELTGETRAALESGVVDAVLNQDAGHEVRSAIRVLRAKADGLPVNAAQERIRLDIFIKDNLPADPDEEN*