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SCNpilot_expt_1000_bf_scaffold_4405_curated_14

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 11238..11423

Top 3 Functional Annotations

Value Algorithm Source
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.8
  • Coverage: 62.0
  • Bit_score: 136
  • Evalue 1.30e-29
xylA; xylose isomerase (EC:5.3.1.5) similarity KEGG
DB: KEGG
  • Identity: 93.5
  • Coverage: 62.0
  • Bit_score: 133
  • Evalue 1.90e-29
Xylose isomerase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FZK4_RHIML similarity UNIREF
DB: UNIREF100
  • Identity: 93.5
  • Coverage: 62.0
  • Bit_score: 133
  • Evalue 6.00e-29

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 186
ATGGGCAAGCGCATGGAGGATCACCTGCGCTTCGCCGTCGCCTACTGGCACACCTTCGTCTGGCCGGGCGGCGACCCCTTTGGCGGCCAGACCTTCGAGCGCCCGTGGTTCGAGGACAGCATGAAGGCGGCGAAGCTGAAGGCCGACGTCGCCTTCGAATTCTTCCAGCTCCTCGGCGTGCCCTTC
PROTEIN sequence
Length: 62
MGKRMEDHLRFAVAYWHTFVWPGGDPFGGQTFERPWFEDSMKAAKLKADVAFEFFQLLGVPF