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SCNpilot_expt_1000_bf_scaffold_12633_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3108..3902)

Top 3 Functional Annotations

Value Algorithm Source
Extracellular solute-binding protein n=2 Tax=Rhizobiaceae RepID=F7UHS0_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 87.2
  • Coverage: 281.0
  • Bit_score: 480
  • Evalue 8.50e-133
  • rbh
ABC-type amino acid transport/signal transduction systemperiplasmic component {ECO:0000313|EMBL:EYR82669.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.2
  • Coverage: 281.0
  • Bit_score: 480
  • Evalue 1.20e-132
extracellular solute-binding protein similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 281.0
  • Bit_score: 462
  • Evalue 7.50e-128
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 795
ATGTTTAAATCCATTCTGGCCGGATGCGTCCTGAGCGCCGCTTTGGCGATGCCGGCGCTGGCCGATGTCATTCCCGCGCTGCACGATGCGCTGCCGCAGGAATACAGGGACAACGGCATCAAGGCCGCGGTCTTCAACGACTGGGCGCCGGACGAGTACCAGGACGCCGACGGCCAGCTCAAGGGCTGGAGCGTCGACATCGCCAAGGAGATGGAGCAGCGCCTCGGCGTGACCTTCACCTTCGAGGGCACGAGCTTCGACGCCATCATTCCGGGCCTGCAGTCCAAGCGTTTCGACGCGGGCTTCTCGTCCTTCGGCACCACGGCGGAGCGCCTGAAGACGCTCGACTTCGTGTCCCAGCGCCGGATCGGCACCTCCTTCGCCTACCCGGCGGACAGCACGCTGGACATCAAGTCGGCGGGCGATGCCTGCGGCCTGACGGTCGCCGTGCTCAACGGTTCCTGGGACATCGGCCTTCTCGAAAGGCTGAACGCCAACGAGTGCAAGGACAAGCCGGTCGTGATGCAGACCCATGGCACGCAGGCGCAGGCCGAGCTTGCCGTGCGCTCCAACCGCGCGCAGGCCACGGTGGGCGGATCGGTCAAGCTGGCCTATATGGCAAAGCAGACGGGTGACCTCAAGGTGGCCGAGCTGGTCCTGTCGCCGGTNNNNNNNNNNNNNNNNNNNNNNNACGACGGCACCTATGAGAAGATCATGGCCAAGTGGGGCCTCGACGACAGCGGCATGCTGACCAAGGCGCTGCTGATCACGGAAGAGAACCCGGCCGATCTTTGA
PROTEIN sequence
Length: 265
MFKSILAGCVLSAALAMPALADVIPALHDALPQEYRDNGIKAAVFNDWAPDEYQDADGQLKGWSVDIAKEMEQRLGVTFTFEGTSFDAIIPGLQSKRFDAGFSSFGTTAERLKTLDFVSQRRIGTSFAYPADSTLDIKSAGDACGLTVAVLNGSWDIGLLERLNANECKDKPVVMQTHGTQAQAELAVRSNRAQATVGGSVKLAYMAKQTGDLKVAELVLSPXXXXXXXXXDGTYEKIMAKWGLDDSGMLTKALLITEENPADL*