ggKbase home page

SCNpilot_expt_1000_bf_scaffold_25283_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1680..2012)

Top 3 Functional Annotations

Value Algorithm Source
Putative signaling protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF78_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.5
  • Coverage: 91.0
  • Bit_score: 175
  • Evalue 3.20e-41
Putative signaling protein {ECO:0000313|EMBL:EYR79006.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.5
  • Coverage: 91.0
  • Bit_score: 175
  • Evalue 4.50e-41
signaling protein similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 90.0
  • Bit_score: 150
  • Evalue 2.70e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 333
ATGCTCGACAATCCTGTCGTGCGCGAGGTGCTGGACGCGCTGTCCGACCTTGGCTGCCGCATCGCGCTCGACGATTTCGGCACGGGCTATTCCTCGCTGAGCTACCTCAACCGCTTCCCGGTCGACATCGTGAAGGTCGATCAGTCCTTCACCCGGTCGCTCTCCTCCGAGCAGCCGGACGTGCGCCGCAAGAGCCGCATGCTGGTCGAGGGCATCCGCACCATCTCGCACCAGATGGGCTGCGCCGTGGTGGCGGAAGGCATCGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCAGCCGGCCGCCGCCGCTCGAGACGCTTCTTGA
PROTEIN sequence
Length: 111
MLDNPVVREVLDALSDLGCRIALDDFGTGYSSLSYLNRFPVDIVKVDQSFTRSLSSEQPDVRRKSRMLVEGIRTISHQMGCAVVAEGIEXXXXXXXXXXPQPAAAARDAS*