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SCNpilot_expt_1000_bf_scaffold_6924_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(4939..5151)

Top 3 Functional Annotations

Value Algorithm Source
Thiamine transport system permease protein ThiP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPV5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.1
  • Coverage: 70.0
  • Bit_score: 125
  • Evalue 2.40e-26
Thiamine transport system permease protein ThiP {ECO:0000313|EMBL:EYR78964.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.1
  • Coverage: 70.0
  • Bit_score: 125
  • Evalue 3.40e-26
thiP; thiamine transporter membrane protein; K02063 thiamine transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 68.7
  • Coverage: 67.0
  • Bit_score: 95
  • Evalue 8.50e-18

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 213
ATGGCGCTGTCGCTCGGCGATCTCGGCGCCGTCGCCATCTTCGGCGCGGAGGGCTTCGTCACGCTGCCCTGGCTGCTCTATTCCCGCATGGCGAGCTACCGCACGGCCGATGCCGCGGGCATCGCGCTGATCCTCGGCGTGCTGTGCCTGCTGCTGACGCTGCCCTCGACCGCCACTGATCGCCAAACCGAAAGACCCGGCTCCGATGCCTGA
PROTEIN sequence
Length: 71
MALSLGDLGAVAIFGAEGFVTLPWLLYSRMASYRTADAAGIALILGVLCLLLTLPSTATDRQTERPGSDA*