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SCNpilot_expt_1000_bf_scaffold_3587_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2..307

Top 3 Functional Annotations

Value Algorithm Source
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR78648.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.0
  • Coverage: 101.0
  • Bit_score: 202
  • Evalue 2.40e-49
UPI0003CF7CA0 related cluster n=1 Tax=unknown RepID=UPI0003CF7CA0 similarity UNIREF
DB: UNIREF100
  • Identity: 85.1
  • Coverage: 101.0
  • Bit_score: 183
  • Evalue 8.30e-44
branched-chain amino acid ABC transporter, periplasmic substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 76.9
  • Coverage: 104.0
  • Bit_score: 170
  • Evalue 3.00e-40

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 306
GAATTCGTCGAGCGCTACACCAAGATGTTCGGCGAATACAACGACGAGTCCAACACCAAGGTCTATGCGCTCGAATACATCATCGAGACGCTGAAGGCGAACCCGGCGGCCATCGACAACGTCGATGAATACAAGAAGACCATGGACACGTTCGAGGCGCCGAATCCCTTCATGAAGGGCGACGCCAAGCTGAAATATGTCGGCATGACCTCCTTCGGCCAGAAGCGTCAGGTCTCCGTCCCGCTCGTCGTCAACGAGTACAAGGGCGGCAAGTTCGAGACGCTGTTCGTCGGCCAGGTCGACTGA
PROTEIN sequence
Length: 102
EFVERYTKMFGEYNDESNTKVYALEYIIETLKANPAAIDNVDEYKKTMDTFEAPNPFMKGDAKLKYVGMTSFGQKRQVSVPLVVNEYKGGKFETLFVGQVD*