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SCNpilot_expt_1000_bf_scaffold_3587_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3587_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..307
DNA (306bp) protein (102aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR78648.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
UPI0003CF7CA0 related cluster n=1 Tax=unknown RepID=UPI0003CF7CA0
branched-chain amino acid ABC transporter, periplasmic substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3587_curated_2
unknown

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comp(538..801)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3587_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1540..2214
DNA (675bp) protein (225aa)
ABC-type branched-chain amino acid transport system permease component {ECO:0000313|EMBL:EYR78650.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EFL7_9RHOB rbh
livM2; branched-chain amino acid ABC transporter permease LivM; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2211..2993
DNA (783bp) protein (261aa)
High-affinity branched-chain amino acid transport ATP-binding protein LivG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW75_9RHIZ rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:EYR78651.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
livG2; branched-chain amino acid ABC transporter ATP-binding protein LivG (EC:3.6.3.22); K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2997..3719
DNA (723bp) protein (241aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM43_9RHIZ rbh
High-affinity branched-chain amino acid transport ATP-binding protein BraG {ECO:0000313|EMBL:EYR78652.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3721..4440
DNA (720bp) protein (240aa)
Hydantoin racemase HyuE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6B9_9RHIZ rbh
Hydantoin racemase HyuE {ECO:0000313|EMBL:EYR78653.1}; EC=5.1.99.5 {ECO:0000313|EMBL:EYR78653.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydantoin racemase rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4468..5526)
DNA (1059bp) protein (353aa)
Sulfate/thiosulfate import ATP-binding protein CysA 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7V5_9RHIZ rbh
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease; K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25] rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5546..6406)
DNA (861bp) protein (287aa)
Sulfate transport system permease protein CysW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQP1_9RHIZ rbh
Sulfate transport system permease protein CysW {ECO:0000313|EMBL:EYR81637.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sulfate ABC transporter permease; K02047 sulfate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6396..7235)
DNA (840bp) protein (280aa)
Sulfate transport system permease protein CysT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT67_9RHIZ rbh
Sulfate transport system permease protein CysT {ECO:0000313|EMBL:EYR81638.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sulfate ABC transporter permease; K02046 sulfate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7265..8290)
DNA (1026bp) protein (342aa)
Sulfate-binding protein Sbp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS6_9RHIZ rbh
Sulfate-binding protein Sbp {ECO:0000313|EMBL:EYR81639.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sulfate ABC transporter substrate-binding protein; K02048 sulfate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8514..8948)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNR1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81640.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3587_curated_12
unknown

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9129..9902
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3587_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10131..11237
DNA (1107bp) protein (369aa)
FMNH2-dependent monooxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHN5_9RHIZ rbh
FMNH2-dependent monooxygenase protein {ECO:0000313|EMBL:EYR79352.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FMNH2-dependent monooxygenase
SCNpilot_expt_1000_bf_scaffold_3587_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11480..11971)
DNA (492bp) protein (164aa)
Free methionine-R-sulfoxide reductase MsrC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM8_9RHIZ
Free methionine-R-sulfoxide reductase MsrC {ECO:0000313|EMBL:EYR84423.1}; EC=1.8.4.14 {ECO:0000313|EMBL:EYR84423.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative GAF sensor protein; K07170 GAF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3587_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12124..12852)
DNA (729bp) protein (243aa)
putative monooxygenase protein
Putative monooxygenase protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HF74_RHIRD
Putative monooxygenase protein {ECO:0000313|EMBL:EHJ96241.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_expt_1000_bf_scaffold_3587_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12893..13876)
DNA (984bp) protein (328aa)
Putative monooxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX22_9RHIZ rbh
Putative monooxygenase protein {ECO:0000313|EMBL:EYR83096.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative monooxygenase protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13941..15014)
DNA (1074bp) protein (358aa)
(R,R)-butanediol dehydrogenase BdhA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFQ3_9RHIZ rbh
(R,R)-butanediol dehydrogenase BdhA {ECO:0000313|EMBL:EYR83097.1}; EC=1.1.1.4 {ECO:0000313|EMBL:EYR83097.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zinc-binding dehydrogenase (EC:1.1.1.-) rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15176..17047)
DNA (1872bp) protein (624aa)
Acetoin catabolism regulatory protein AcoR {ECO:0000313|EMBL:EYR83098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acetoin catabolism regulatory protein AcoR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVR4_9RHIZ rbh
acetoin catabolism regulatory protein rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_19
Pantoea sp. BL1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17399..17989)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Pantoea sp. A4 RepID=UPI00035D331E
Branched-chain amino acid permease {ECO:0000313|EMBL:KJV48969.1}; TaxID=1628190 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. BL1.;"
AzlC family protein
SCNpilot_expt_1000_bf_scaffold_3587_curated_20
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18196..19131
DNA (936bp) protein (312aa)
Transcriptional regulator, AraC family n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FR84_PHAMO
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCG40872.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3587_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19138..19899)
DNA (762bp) protein (254aa)
Selenide, water dikinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEM7_9RHIZ rbh
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
selenophosphate synthetase; K01008 selenide, water dikinase [EC:2.7.9.3] rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20331..20930
DNA (600bp) protein (200aa)
Formate dehydrogenase-O major subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW14_9RHIZ rbh
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:EYR84549.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR84549.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hformate dehydrogenase, alpha subunit (EC:1.2.1.2) rbh
SCNpilot_expt_1000_bf_scaffold_3587_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20979..21263
DNA (285bp) protein (95aa)
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:EYR84548.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR84548.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003712D54
formate dehydrogenase, alpha subunit (EC:1.2.1.2)
Displaying 23 items

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