name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_3587_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..307
|
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR78648.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
UPI0003CF7CA0 related cluster n=1 Tax=unknown RepID=UPI0003CF7CA0
branched-chain amino acid ABC transporter, periplasmic substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_2
unknown
|
Not on your lists |
comp(538..801)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1540..2214
|
ABC-type branched-chain amino acid transport system permease component {ECO:0000313|EMBL:EYR78650.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EFL7_9RHOB
rbh
livM2; branched-chain amino acid ABC transporter permease LivM; K01998 branched-chain amino acid transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2211..2993
|
High-affinity branched-chain amino acid transport ATP-binding protein LivG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW75_9RHIZ
rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:EYR78651.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
livG2; branched-chain amino acid ABC transporter ATP-binding protein LivG (EC:3.6.3.22); K01995 branched-chain amino acid transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2997..3719
|
High-affinity branched-chain amino acid transport ATP-binding protein BraG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM43_9RHIZ
rbh
High-affinity branched-chain amino acid transport ATP-binding protein BraG {ECO:0000313|EMBL:EYR78652.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3721..4440
|
Hydantoin racemase HyuE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6B9_9RHIZ
rbh
Hydantoin racemase HyuE {ECO:0000313|EMBL:EYR78653.1}; EC=5.1.99.5 {ECO:0000313|EMBL:EYR78653.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydantoin racemase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4468..5526)
|
Sulfate/thiosulfate import ATP-binding protein CysA 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7V5_9RHIZ
rbh
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5546..6406)
|
Sulfate transport system permease protein CysW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQP1_9RHIZ
rbh
Sulfate transport system permease protein CysW {ECO:0000313|EMBL:EYR81637.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sulfate ABC transporter permease; K02047 sulfate transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6396..7235)
|
Sulfate transport system permease protein CysT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT67_9RHIZ
rbh
Sulfate transport system permease protein CysT {ECO:0000313|EMBL:EYR81638.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sulfate ABC transporter permease; K02046 sulfate transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7265..8290)
|
Sulfate-binding protein Sbp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS6_9RHIZ
rbh
Sulfate-binding protein Sbp {ECO:0000313|EMBL:EYR81639.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sulfate ABC transporter substrate-binding protein; K02048 sulfate transport system substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8514..8948)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNR1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81640.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_12
unknown
|
Not on your lists |
9129..9902
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10131..11237
|
FMNH2-dependent monooxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHN5_9RHIZ
rbh
FMNH2-dependent monooxygenase protein {ECO:0000313|EMBL:EYR79352.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FMNH2-dependent monooxygenase
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11480..11971)
|
Free methionine-R-sulfoxide reductase MsrC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM8_9RHIZ
Free methionine-R-sulfoxide reductase MsrC {ECO:0000313|EMBL:EYR84423.1}; EC=1.8.4.14 {ECO:0000313|EMBL:EYR84423.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative GAF sensor protein; K07170 GAF domain-containing protein
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12124..12852)
|
putative monooxygenase protein
Putative monooxygenase protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HF74_RHIRD
Putative monooxygenase protein {ECO:0000313|EMBL:EHJ96241.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12893..13876)
|
Putative monooxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX22_9RHIZ
rbh
Putative monooxygenase protein {ECO:0000313|EMBL:EYR83096.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative monooxygenase protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13941..15014)
|
(R,R)-butanediol dehydrogenase BdhA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFQ3_9RHIZ
rbh
(R,R)-butanediol dehydrogenase BdhA {ECO:0000313|EMBL:EYR83097.1}; EC=1.1.1.4 {ECO:0000313|EMBL:EYR83097.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zinc-binding dehydrogenase (EC:1.1.1.-)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15176..17047)
|
Acetoin catabolism regulatory protein AcoR {ECO:0000313|EMBL:EYR83098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acetoin catabolism regulatory protein AcoR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVR4_9RHIZ
rbh
acetoin catabolism regulatory protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_19
Pantoea sp. BL1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17399..17989)
|
hypothetical protein n=1 Tax=Pantoea sp. A4 RepID=UPI00035D331E
Branched-chain amino acid permease {ECO:0000313|EMBL:KJV48969.1}; TaxID=1628190 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. BL1.;"
AzlC family protein
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_20
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18196..19131
|
Transcriptional regulator, AraC family n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FR84_PHAMO
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCG40872.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
AraC family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19138..19899)
|
Selenide, water dikinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEM7_9RHIZ
rbh
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20331..20930
|
Formate dehydrogenase-O major subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW14_9RHIZ
rbh
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:EYR84549.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR84549.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hformate dehydrogenase, alpha subunit (EC:1.2.1.2)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3587_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20979..21263
|
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:EYR84548.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR84548.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003712D54
formate dehydrogenase, alpha subunit (EC:1.2.1.2)
|