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SCNpilot_expt_1000_bf_scaffold_3587_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 1540..2214

Top 3 Functional Annotations

Value Algorithm Source
ABC-type branched-chain amino acid transport system permease component {ECO:0000313|EMBL:EYR78650.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.5
  • Coverage: 224.0
  • Bit_score: 423
  • Evalue 1.50e-115
Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EFL7_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 86.5
  • Coverage: 223.0
  • Bit_score: 386
  • Evalue 1.80e-104
  • rbh
livM2; branched-chain amino acid ABC transporter permease LivM; K01998 branched-chain amino acid transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 74.6
  • Coverage: 224.0
  • Bit_score: 330
  • Evalue 4.90e-88
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 675
GTGCTGATCGGCCTGCCGATCCTGCGCCTGCGCGGCGTCTACTTCGCCATGGTGACGCTGGTACTGACGGAGGTCGCACGCCTCTCCGCCCTTGCCCTGCCGATTACCAACGGCGCGAAGGGCATCACCTCGATCCCGCTGCCGGGCGAGCTCTCGATCTTCGGCCTCACCGTCATTCCGGCCTTCGGATCGCTCTCCAATCCGCGCTTCGGCTTCTACATGATGGCCGCCGCACTGATGGTCGTCACCTATCTCGTGCTCTGGCGCATCGTGAACTCGCGGCTCGGGCACCTGTGCCGCAGCCTCCAGCAGAACGAGGAGCTTTCGGCCTCGATCGGCGTCAACACCGCCTATCTCAGGGTGCTCGCCTATGCGATCTCCTCGTTCTTCGGCGGCATCGCGGGCGCCATGTTCGCCTCCATCTCGCAGTCGATCTATCCGTCCTCCTTCGTGGTCGCCGACAGCGTGAACTTCATGCTCTACTGCTTCCTCGGCGGCCTCGGATACGTCTTCGGCCCGATGCTCGGCACGCTCCTGCTCTATTTCGGCTGGGACCTGCTGTCGATCGCCAGGGAATACCAGCTCCTCATCTACTCCGGCGTCATGATCCTGCTCATGCTGGTCCTGCCGAACGGCGTCCTGAGCCTGCTCGACAAGAAGGAGGGCCGTGCATGA
PROTEIN sequence
Length: 225
VLIGLPILRLRGVYFAMVTLVLTEVARLSALALPITNGAKGITSIPLPGELSIFGLTVIPAFGSLSNPRFGFYMMAAALMVVTYLVLWRIVNSRLGHLCRSLQQNEELSASIGVNTAYLRVLAYAISSFFGGIAGAMFASISQSIYPSSFVVADSVNFMLYCFLGGLGYVFGPMLGTLLLYFGWDLLSIAREYQLLIYSGVMILLMLVLPNGVLSLLDKKEGRA*