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SCNpilot_expt_1000_bf_scaffold_2346_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(4792..5364)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator DgdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR43_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 174.0
  • Bit_score: 349
  • Evalue 1.60e-93
  • rbh
HTH-type transcriptional regulator DgdR {ECO:0000313|EMBL:EYR80099.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 174.0
  • Bit_score: 349
  • Evalue 2.30e-93
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 88.4
  • Coverage: 173.0
  • Bit_score: 322
  • Evalue 8.80e-86
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGCTGCGCATCGGCACGCCGGACGACTATGCCGACCGCTACATGCCCGAGATCATCATGCGGTTCGCCAAGACGCATCCCAATGTCGAGCTCTATATCGTCTGCGAGCCCTCCGTCGACCTTGCCGAGAAGATGGCAAGGGGCGAGCTCGACATCGCGCTCGTCACGCACAATCCGCGCCAGCGCCAGTCCGACGTGGTGCGGACGGAGCCGCTCTGCTGGGTCATGTCGGCCAACCATCCGCTGCCGGAGAACGCACCGGTGCCGCTCGCCGTCGGCCGGCGGGACTGCCAGTGGCGGCAGATCGCGTGCGCGGCGCTCGATTCTGTCGGGCGCGACTACCAGGTGCTGTTCACGAGCTGGTCCTCCACCGTGGTCGCCGCGGCCGTCATGGCGGGCATGGCGGTCTCGGTGCTGCCCGAATCGGCGCTGCGCCCCGGCATGAAGGTGCTGACGCAGGCGGACGGCTTCCCGCCGCTCGCCCCGGTGCAGATCGGCATCATGCGGCGGCCGGGCCTTTCNNNNNNNNNNNGCCTGCCTCGACAACATCACGCCGCTCTCGGCGGCCGATGA
PROTEIN sequence
Length: 191
MLRIGTPDDYADRYMPEIIMRFAKTHPNVELYIVCEPSVDLAEKMARGELDIALVTHNPRQRQSDVVRTEPLCWVMSANHPLPENAPVPLAVGRRDCQWRQIACAALDSVGRDYQVLFTSWSSTVVAAAVMAGMAVSVLPESALRPGMKVLTQADGFPPLAPVQIGIMRRPGLXXXXXLPRQHHAALGGR*