name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2346_curated_1
unknown
|
Not on your lists |
comp(2..211)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
570..2066
|
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMM1_9RHIZ
rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2212..2571
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80094.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2675..3094
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXS0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80095.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3176..4051
|
Dienelactone hydrolase {ECO:0000313|EMBL:EYR80096.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PKU0_9RHIZ
rbh
putative carboxymethylenebutenolidase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4150..4722)
|
N-acetyltransferase GCN5 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGV3_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EYR80098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4792..5364)
|
HTH-type transcriptional regulator DgdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR43_9RHIZ
rbh
HTH-type transcriptional regulator DgdR {ECO:0000313|EMBL:EYR80099.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_8
unknown
|
Not on your lists |
5379..5654
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5902..6198
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYK9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80100.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6381..7223)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6X3_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80102.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7316..8689)
|
Glutamate--cysteine ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY42_9RHIZ
rbh
Glutamate--cysteine ligase {ECO:0000313|EMBL:EYR80103.1}; EC=6.3.2.2 {ECO:0000313|EMBL:EYR80103.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8827..9564)
|
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHZ3_9RHIZ
rbh
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9578..11080)
|
Phosphate transport permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYL2_9RHIZ
rbh
Phosphate transport permease {ECO:0000313|EMBL:EYR80105.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phosphate/sulfate permease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11254..11778)
|
NTP pyrophosphohydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2F7_9RHIZ
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EYR80106.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NTP pyrophosphohydrolase protein, MuT/nudix family
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11848..12642)
|
Pyruvate dehydrogenase complex repressor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6X8_9RHIZ
rbh
Pyruvate dehydrogenase complex repressor {ECO:0000313|EMBL:EYR80107.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
regulator of the GntR family
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12780..14066
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXU5_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80108.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14076..15059)
|
HTH-type transcriptional activator TtdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQV8_9RHIZ
rbh
HTH-type transcriptional activator TtdR {ECO:0000313|EMBL:EYR80112.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15967..16554
|
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTC3_9RHIZ
rbh
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EYR80113.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16551..17750
|
Glycolate oxidase subunit GlcE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXY9_9RHIZ
rbh
Glycolate oxidase subunit GlcE {ECO:0000313|EMBL:EYR80114.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glcE1; glycolate oxidase subunit GlcE
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17929..19251
|
Glycolate oxidase iron-sulfur subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C819_9RHIZ
rbh
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glcF; glycolate oxidase, iron-sulfur subunit (EC:1.1.3.15); K11473 glycolate oxidase iron-sulfur subunit
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_21
unknown
|
Not on your lists |
19934..20164
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20362..21099)
|
Putative L,D-transpeptidase ErfK/SrfK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ4_9RHIZ
rbh
Putative L,D-transpeptidase ErfK/SrfK {ECO:0000313|EMBL:EYR80119.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR80119.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ybiS; L,D-transpeptidase YbiS (EC:2.-.-.-)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_23
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21093..21740)
|
UPI0003CF4BAD related cluster n=1 Tax=unknown RepID=UPI0003CF4BAD
Uncharacterized protein {ECO:0000313|EMBL:EGE58189.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21745..21906
|
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:EYR80120.1}; EC=3.2.2.20 {ECO:0000313|EMBL:EYR80120.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tag; DNA-3-methyladenine glycosylase I; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
3-methyladenine DNA glycosylase n=1 Tax=Rhizobium meliloti RepID=UPI000374771D
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22061..22279
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXT6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80121.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22514..22888)
|
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003609A1B
putative signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:AEH77719.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_27
unknown
|
Not on your lists |
comp(22947..23234)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23523..25037
|
histidyl-tRNA synthase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036A7254
rbh
Histidine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000255|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00127}; Short=HisRS {ECO:0000255|HAMAP-Rule:MF_00127};; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
|
|
SCNpilot_expt_1000_bf_scaffold_2346_curated_29
unknown
|
Not on your lists |
comp(24874..25716)
|
This feature has no annotations |