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SCNpilot_expt_1000_bf_scaffold_2346_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2346_curated_1
unknown

Not on your lists

comp(2..211)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2346_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

570..2066
DNA (1497bp) protein (499aa)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMM1_9RHIZ rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
guaB; inositol-5-monophosphate dehydrogenase; K00088 IMP dehydrogenase [EC:1.1.1.205] rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2212..2571
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80094.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2346_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2675..3094
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXS0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80095.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2346_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3176..4051
DNA (876bp) protein (292aa)
Dienelactone hydrolase {ECO:0000313|EMBL:EYR80096.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PKU0_9RHIZ rbh
putative carboxymethylenebutenolidase rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4150..4722)
DNA (573bp) protein (191aa)
N-acetyltransferase GCN5 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGV3_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EYR80098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_2346_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4792..5364)
DNA (573bp) protein (191aa)
HTH-type transcriptional regulator DgdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR43_9RHIZ rbh
HTH-type transcriptional regulator DgdR {ECO:0000313|EMBL:EYR80099.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_8
unknown

Not on your lists

5379..5654
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2346_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5902..6198
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYK9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80100.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2346_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6381..7223)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6X3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80102.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7316..8689)
DNA (1374bp) protein (458aa)
Glutamate--cysteine ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY42_9RHIZ rbh
Glutamate--cysteine ligase {ECO:0000313|EMBL:EYR80103.1}; EC=6.3.2.2 {ECO:0000313|EMBL:EYR80103.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutamate--cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2] rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8827..9564)
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHZ3_9RHIZ rbh
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9578..11080)
DNA (1503bp) protein (501aa)
Phosphate transport permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYL2_9RHIZ rbh
Phosphate transport permease {ECO:0000313|EMBL:EYR80105.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phosphate/sulfate permease rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11254..11778)
DNA (525bp) protein (175aa)
NTP pyrophosphohydrolase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2F7_9RHIZ
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EYR80106.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NTP pyrophosphohydrolase protein, MuT/nudix family
SCNpilot_expt_1000_bf_scaffold_2346_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11848..12642)
DNA (795bp) protein (265aa)
Pyruvate dehydrogenase complex repressor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6X8_9RHIZ rbh
Pyruvate dehydrogenase complex repressor {ECO:0000313|EMBL:EYR80107.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
regulator of the GntR family rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12780..14066
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXU5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80108.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14076..15059)
DNA (984bp) protein (328aa)
HTH-type transcriptional activator TtdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQV8_9RHIZ rbh
HTH-type transcriptional activator TtdR {ECO:0000313|EMBL:EYR80112.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15967..16554
DNA (588bp) protein (196aa)
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTC3_9RHIZ rbh
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EYR80113.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glcD2; glycolate oxidase, subunit GlcD (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15] rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16551..17750
DNA (1200bp) protein (400aa)
Glycolate oxidase subunit GlcE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXY9_9RHIZ rbh
Glycolate oxidase subunit GlcE {ECO:0000313|EMBL:EYR80114.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glcE1; glycolate oxidase subunit GlcE rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17929..19251
DNA (1323bp) protein (441aa)
Glycolate oxidase iron-sulfur subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C819_9RHIZ rbh
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glcF; glycolate oxidase, iron-sulfur subunit (EC:1.1.3.15); K11473 glycolate oxidase iron-sulfur subunit rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_21
unknown

Not on your lists

19934..20164
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2346_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20362..21099)
DNA (738bp) protein (246aa)
Putative L,D-transpeptidase ErfK/SrfK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ4_9RHIZ rbh
Putative L,D-transpeptidase ErfK/SrfK {ECO:0000313|EMBL:EYR80119.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR80119.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ybiS; L,D-transpeptidase YbiS (EC:2.-.-.-) rbh
SCNpilot_expt_1000_bf_scaffold_2346_curated_23
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21093..21740)
DNA (648bp) protein (216aa)
UPI0003CF4BAD related cluster n=1 Tax=unknown RepID=UPI0003CF4BAD
Uncharacterized protein {ECO:0000313|EMBL:EGE58189.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_2346_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21745..21906
DNA (162bp) protein (54aa)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:EYR80120.1}; EC=3.2.2.20 {ECO:0000313|EMBL:EYR80120.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tag; DNA-3-methyladenine glycosylase I; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
3-methyladenine DNA glycosylase n=1 Tax=Rhizobium meliloti RepID=UPI000374771D
SCNpilot_expt_1000_bf_scaffold_2346_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22061..22279
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXT6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80121.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2346_curated_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22514..22888)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003609A1B
putative signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:AEH77719.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_2346_curated_27
unknown

Not on your lists

comp(22947..23234)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2346_curated_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23523..25037
DNA (1515bp) protein (505aa)
histidyl-tRNA synthase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036A7254 rbh
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
Histidine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000255|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00127}; Short=HisRS {ECO:0000255|HAMAP-Rule:MF_00127};; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2346_curated_29
unknown

Not on your lists

comp(24874..25716)
DNA (843bp) protein (281aa)

This feature has no annotations

Displaying 29 items

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