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SCNpilot_expt_1000_bf_scaffold_2346_curated_22

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(20362..21099)

Top 3 Functional Annotations

Value Algorithm Source
Putative L,D-transpeptidase ErfK/SrfK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.2
  • Coverage: 246.0
  • Bit_score: 438
  • Evalue 5.90e-120
  • rbh
Putative L,D-transpeptidase ErfK/SrfK {ECO:0000313|EMBL:EYR80119.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR80119.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.2
  • Coverage: 246.0
  • Bit_score: 438
  • Evalue 8.20e-120
ybiS; L,D-transpeptidase YbiS (EC:2.-.-.-) similarity KEGG
DB: KEGG
  • Identity: 73.7
  • Coverage: 247.0
  • Bit_score: 364
  • Evalue 2.00e-98
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 738
ATGTTGATACGAATCCTTCTTGCAGCCACCATCCTGGCCACCACGACCAACGCCCATGCGAGCGACCGCTACATGAGCCGGCCGCCCGTCATCGTGAGCCCCGACCTCACCGCCCCCTGGCTGATGCAACTCACCGGCGCGGGCGTGCAGCCCGCCGTCAACACGCGCCGGATCATCCAGCGCCAGCGGGTGGAGCAGCGCCGCGTCATCCGGCGCGACGGCGCCCGCGTCGAGCAGGTCGCGGTGACGAGCCGCGCGCAGAACCCGATCCGCTCGAAGCTCGACCCGGCATACCTGCCGCAGCTCGTTTCCTACGACAGCAAGCACAAGGCGGGCACGATCGTCATCGATACCAACAACCGCTTCCTCTACCTCGTGCTCGGCGACGGCAAGGCGCGGCGCTATGGCGTCGGCGTCGGCAAGCCGGGCTTCGAATGGGCCGGCGCGCATACCATCACCCGCAAGGCCGAATGGCCGAGCTGGACGCCGCCGAAGGAGATGATCCAGCGCGAGGCGGCCAAGGGCCATTACCTGCCGGCCTTCATGGAGGGCGGCCCGGAAAACCCGCTCGGCTCGCGCGCCATGTATCTCGGCTCCACGCTTTACCGCATCCACGGCACGAATGCGCCCTGGACGATCGGCTACGGCGTTTCCTCCGGCTGCATCCGCATGCGCAACGAGGATGTCGTCGATCTCTACGAGCGCGTGAAGGTCGGCACCAAGGTCATCGTGATCTGA
PROTEIN sequence
Length: 246
MLIRILLAATILATTTNAHASDRYMSRPPVIVSPDLTAPWLMQLTGAGVQPAVNTRRIIQRQRVEQRRVIRRDGARVEQVAVTSRAQNPIRSKLDPAYLPQLVSYDSKHKAGTIVIDTNNRFLYLVLGDGKARRYGVGVGKPGFEWAGAHTITRKAEWPSWTPPKEMIQREAAKGHYLPAFMEGGPENPLGSRAMYLGSTLYRIHGTNAPWTIGYGVSSGCIRMRNEDVVDLYERVKVGTKVIVI*