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SCNpilot_expt_1000_bf_scaffold_2346_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(14076..15059)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional activator TtdR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQV8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.6
  • Coverage: 298.0
  • Bit_score: 539
  • Evalue 3.30e-150
  • rbh
HTH-type transcriptional activator TtdR {ECO:0000313|EMBL:EYR80112.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.6
  • Coverage: 298.0
  • Bit_score: 539
  • Evalue 4.60e-150
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 76.5
  • Coverage: 298.0
  • Bit_score: 475
  • Evalue 1.40e-131
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 984
GTGGTCTGTTTTCTTTACCACTTTCTATTGCAGGGTGCAAATGCTAAGCATTTTGTCCGTTTCGGCACCAATGTGGACCCCGCCTGCATGACCAATCTCGGCGATCTCGAAATCTTCTCCCGCGTCATCGCCATGGGCAGCATGTCGGCGGCGGGCCGGGCGCTCGGGCTCTCCCCGGCCGTGGTCTCCAAGCGCGTGAAACGGCTGGAGGAACGGCTCGGCACGCGGCTCTTCCAGCGCACCACGCGGCAGATCTCGCTGACGGAGGCCGGACAGGGTTTCTACGAGCGCATCGTCGGCATCCTTGCCGGCATCGAGGAGGCGGAGGCCTTCGTTTCCGGTCGCTCCGGCGCGGTGCGCGGGTCGCTGCGCATTTCCGCGCCGACCTCCTTCGGCCGCATGCATATCGCCTCCCATCTCCGGGGCTTCATGGACAGCTACCCGGATCTCGTCGTCAACCTCGTCCTCACCGACGACTTCTCCGACATCGTCGGCGGCGGCTTCGACCTTGCGATCCGCATCGGGGAACTGTCGGATTCCTCGCTCGTCGCGCGACGGCTGGCGCCGGTGCGCCGCGTGCTCTGCGCCGCGCCCGACTATCTCGCCCGCCACGGCATGCCGGCCTCGCTGGAGGATCTTGCCCATCACGTCTGCCTGCCGCCGCACACGCAGGACACCTGGCGGCTCGAAGGGCCGGAAGGCAACGTCACCTATCGCCCGCACGGGCCGCTCTACACAAATTCCAGCGAGGTCGTGACCGAGGCCGTGCTTTCCGGCATGGGGATCGCCCTGCGCTCGACCTGGGATGTCGGCGCGGCGCTGAAGAGCGGCGGGCTCATGCAGGTGCTGCCGGCCTATGAGGGCTCGCGCAACGTGGTGCTTTCGGCGGTCTATCCGAGCCGGCAGTTCCTGCCGGTCAAGGTGCGGCTGTTCATCGACTACCTCGCCGAGCTCTACGGCCCCGTGCCCTACTGGGAACGGTAG
PROTEIN sequence
Length: 328
VVCFLYHFLLQGANAKHFVRFGTNVDPACMTNLGDLEIFSRVIAMGSMSAAGRALGLSPAVVSKRVKRLEERLGTRLFQRTTRQISLTEAGQGFYERIVGILAGIEEAEAFVSGRSGAVRGSLRISAPTSFGRMHIASHLRGFMDSYPDLVVNLVLTDDFSDIVGGGFDLAIRIGELSDSSLVARRLAPVRRVLCAAPDYLARHGMPASLEDLAHHVCLPPHTQDTWRLEGPEGNVTYRPHGPLYTNSSEVVTEAVLSGMGIALRSTWDVGAALKSGGLMQVLPAYEGSRNVVLSAVYPSRQFLPVKVRLFIDYLAELYGPVPYWER*