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SCNpilot_expt_1000_bf_scaffold_9710_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5842..6051)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein n=2 Tax=Rhizobium radiobacter RepID=F7UC73_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 69.0
  • Bit_score: 143
  • Evalue 6.50e-32
Cold shock protein {ECO:0000313|EMBL:EHH02932.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 69.0
  • Bit_score: 143
  • Evalue 9.10e-32
cold-shock DNA-binding domain protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 98.6
  • Coverage: 69.0
  • Bit_score: 142
  • Evalue 4.60e-32

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Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGACCACCGGCACAGTTAAATGGTTCAATTCCACCAAGGGCTTCGGCTTCATCCAGCCTGACAATGGCGGCGCCGACGCGTTCGTCCACATCTCCGCCGTCGAGCGGGCAGGCATGCGCGAGCTTGTCGAAGGCCAGAAGATCGGTTTCGAGCTGGAGCGCGACAACAAGTCGGGCAAGATGTCGGCCTGCAATCTCCAGGCCGCCTGA
PROTEIN sequence
Length: 70
MTTGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMRELVEGQKIGFELERDNKSGKMSACNLQAA*