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SCNpilot_expt_1000_bf_scaffold_9710_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9710_curated_1
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..875
DNA (873bp) protein (291aa)
NADPH dehydrogenase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000349737B rbh
NADPH dehydrogenase {ECO:0000313|EMBL:KJC42281.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
namA2; NADPH dehydrogenase NamA (EC:1.6.99.1); K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4] rbh
SCNpilot_expt_1000_bf_scaffold_9710_curated_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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887..1798
DNA (912bp) protein (304aa)
gentisate 1,2-dioxygenase n=1 Tax=Aureimonas ureilytica RepID=UPI00035DEB93 rbh
Gentisate 1,2-dioxygenase {ECO:0000313|EMBL:KJC42280.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) rbh
SCNpilot_expt_1000_bf_scaffold_9710_curated_3
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2249..3268
DNA (1020bp) protein (340aa)
aliphatic nitrilase n=1 Tax=Burkholderia kururiensis RepID=UPI000345EF7A rbh
Aliphatic nitrilase {ECO:0000313|EMBL:KJK01497.1}; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
putative aliphatic nitrilase (nitA) (EC:3.5.5.7) rbh
SCNpilot_expt_1000_bf_scaffold_9710_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4167..4973)
DNA (807bp) protein (269aa)
Transglutaminase domain-containing protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XS66_RHIRD rbh
Transglutaminase domain-containing protein {ECO:0000313|EMBL:EHH06783.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
Transglutaminase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_9710_curated_5
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5073..5453)
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM61920.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IBT8_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9710_curated_6
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5487..5711)
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF71080.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
Uncharacterized protein n=2 Tax=Agrobacterium RepID=F0L9Z5_AGRSH
SCNpilot_expt_1000_bf_scaffold_9710_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5842..6051)
DNA (210bp) protein (70aa)
Cold shock protein n=2 Tax=Rhizobium radiobacter RepID=F7UC73_RHIRD
Cold shock protein {ECO:0000313|EMBL:EHH02932.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
cold-shock DNA-binding domain protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_9710_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6625..6927
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000379B93B
Uncharacterized protein {ECO:0000313|EMBL:EKF40370.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9710_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6920..7063
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NR93_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40369.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_9710_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7097..7336
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2MYM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40368.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9710_curated_11
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7333..7611
DNA (279bp) protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF71214.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HGJ7_RHIRD
SCNpilot_expt_1000_bf_scaffold_9710_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7608..7889
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y0X0_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH02935.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9710_curated_13
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8044..8442
DNA (399bp) protein (133aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CK89_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:AAK86281.1}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_expt_1000_bf_scaffold_9710_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8576..9544)
DNA (969bp) protein (323aa)
phaZ1; poly(3-hydroxyalkanoate) depolymerase C (EC:3.1.1.-) rbh
Poly(3-hydroxyalkanoate) depolymerase C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X2Z6_RHIFR rbh
Poly(3-hydroxyalkanoate) depolymerase C {ECO:0000313|EMBL:AFL50252.1}; EC=3.1.1.- {ECO:0000313|EMBL:AFL50252.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Displaying 14 items

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