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SCNpilot_expt_1000_bf_scaffold_3265_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2..295)

Top 3 Functional Annotations

Value Algorithm Source
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWN7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 95.9
  • Coverage: 98.0
  • Bit_score: 187
  • Evalue 5.50e-45
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.9
  • Coverage: 98.0
  • Bit_score: 187
  • Evalue 7.70e-45
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] similarity KEGG
DB: KEGG
  • Identity: 90.8
  • Coverage: 98.0
  • Bit_score: 180
  • Evalue 3.60e-43

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 294
ATGTCCTTTTCCTTCGATTTTGAACCGAAGCCGCGGCGCGTGTCCGTCGGCGTCGATGTCGGCGGCGTGCTCGTCGGCGGCGGCGCCCCCGTCGTCGTGCAGTCGATGACCAACACGGACACGGCCGATGTCGATGCGACGGTGGCGCAGGTCGCGGCCCTCCATAGGGCCGGTTCCGAGATCGTGCGCATCACGGTCGACCGCGACGAGAGCGCGGCGGCGGTGCCGAAGATCCGTGAGCGGCTGCTGAGGCTCGGCCTGGACGTGCCGCTCGTCGGCGACTTCCACTATATC
PROTEIN sequence
Length: 98
MSFSFDFEPKPRRVSVGVDVGGVLVGGGAPVVVQSMTNTDTADVDATVAQVAALHRAGSEIVRITVDRDESAAAVPKIRERLLRLGLDVPLVGDFHYI