name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_3265_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..295)
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWN7_9RHIZ
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(388..1581)
|
Membrane protein MosC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETZ2_9RHIZ
rbh
Membrane protein MosC {ECO:0000313|EMBL:EYR78949.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mosC; membrane protein MosC
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2494..3237)
|
Integral membrane protein {ECO:0000313|EMBL:EYR78961.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein n=1 Tax=Rhizobium giardinii RepID=UPI0003687E4A
rbh
hypothetical protein; K06890
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3425..5977)
|
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP12_9RHIZ
rbh
ABC transporter permease {ECO:0000313|EMBL:EYR78960.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter, permease protein (involved in lysophospholipase L1 biosynthesis); K02004 putative ABC transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5974..6687)
|
Putative ABC transporter, ATP-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6D6_9RHIZ
rbh
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EYR78959.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter, ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6747..7391
|
Putative arylesterase {ECO:0000313|EMBL:EYR78958.1}; EC=3.1.1.2 {ECO:0000313|EMBL:EYR78958.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Lysophospholipase L1-like esterase n=1 Tax=Rhizobium sp. CF142 RepID=J2LAB9_9RHIZ
G-D-S-L family lipolytic protein
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7474..8055
|
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2'-5' RNA ligase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q822_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_8
unknown
|
Not on your lists |
8121..8474
|
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D429C
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8720..11761
|
ATP-dependent DNA or RNA helicase {ECO:0000313|EMBL:EYR78955.1}; EC=3.6.1.- {ECO:0000313|EMBL:EYR78955.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-dependent DNA or RNA helicase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C049_9RHIZ
rbh
helicase domain-containing protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11960..12172
|
RNA-binding S4 domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EI86_9RHIZ
RNA-binding S4 domain-containing protein {ECO:0000313|EMBL:EYR78954.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA-binding S4 domain-containing protein
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12363..12701
|
Ferredoxin {ECO:0000313|EMBL:EYR78953.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ferredoxin n=1 Tax=Rhizobium sp. CF080 RepID=J3B3V9_9RHIZ
fdxA; ferredoxin III protein; K05524 ferredoxin
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13111..13680
|
Transcriptional regulator, CarD family protein {ECO:0000313|EMBL:EYR78952.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional factor regulator, CarD family; K07736 CarD family transcriptional regulator
rbh
Transcriptional factor regulator, CarD family n=2 Tax=Rhizobium fredii RepID=G9A2L2_RHIFH
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14011..14871
|
RNA polymerase sigma factor RpoH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS77_9RHIZ
rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpoH2; RpoH2 heat shock sigma factor; K03089 RNA polymerase sigma-32 factor
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14875..15633)
|
Putative intracellular septation protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ3_9RHIZ
rbh
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ispZ; intracellular septation protein; K06190 intracellular septation protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15630..15923)
|
Signal recognition particle receptor FtsY n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3T6_9RHIZ
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsY; signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_16
RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16053..16337
|
Tax=RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_17
unknown
|
Not on your lists |
16844..17191
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17188..18477)
|
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D884_9RHIZ
rbh
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB {ECO:0000313|EMBL:EYR79676.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR79676.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18474..19373)
|
Diaminopimelate epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF8_9RHIZ
rbh
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20141..21286
|
Signal recognition particle protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ7_9RHIZ
rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21392..21598
|
Chorismate mutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3U2_9RHIZ
Chorismate mutase {ECO:0000313|EMBL:EYR79672.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EYR79672.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3265_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22101..22235
|
Ribosome maturation factor RimM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZG3_9RHIZ
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
|