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SCNpilot_expt_1000_bf_scaffold_3265_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3265_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..295)
DNA (294bp) protein (98aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWN7_9RHIZ
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
SCNpilot_expt_1000_bf_scaffold_3265_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(388..1581)
DNA (1194bp) protein (398aa)
Membrane protein MosC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETZ2_9RHIZ rbh
Membrane protein MosC {ECO:0000313|EMBL:EYR78949.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mosC; membrane protein MosC rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2494..3237)
DNA (744bp) protein (248aa)
Integral membrane protein {ECO:0000313|EMBL:EYR78961.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein n=1 Tax=Rhizobium giardinii RepID=UPI0003687E4A rbh
hypothetical protein; K06890 rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3425..5977)
DNA (2553bp) protein (851aa)
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP12_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:EYR78960.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter, permease protein (involved in lysophospholipase L1 biosynthesis); K02004 putative ABC transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5974..6687)
DNA (714bp) protein (238aa)
Putative ABC transporter, ATP-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6D6_9RHIZ rbh
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EYR78959.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter, ATP-binding protein; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6747..7391
DNA (645bp) protein (215aa)
Putative arylesterase {ECO:0000313|EMBL:EYR78958.1}; EC=3.1.1.2 {ECO:0000313|EMBL:EYR78958.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Lysophospholipase L1-like esterase n=1 Tax=Rhizobium sp. CF142 RepID=J2LAB9_9RHIZ
G-D-S-L family lipolytic protein
SCNpilot_expt_1000_bf_scaffold_3265_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7474..8055
DNA (582bp) protein (194aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2'-5' RNA ligase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q822_9RHIZ rbh
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_8
unknown

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8121..8474
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D429C
SCNpilot_expt_1000_bf_scaffold_3265_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8720..11761
DNA (3042bp) protein (1014aa)
ATP-dependent DNA or RNA helicase {ECO:0000313|EMBL:EYR78955.1}; EC=3.6.1.- {ECO:0000313|EMBL:EYR78955.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-dependent DNA or RNA helicase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C049_9RHIZ rbh
helicase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11960..12172
DNA (213bp) protein (71aa)
RNA-binding S4 domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EI86_9RHIZ
RNA-binding S4 domain-containing protein {ECO:0000313|EMBL:EYR78954.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA-binding S4 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3265_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12363..12701
DNA (339bp) protein (113aa)
Ferredoxin {ECO:0000313|EMBL:EYR78953.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ferredoxin n=1 Tax=Rhizobium sp. CF080 RepID=J3B3V9_9RHIZ
fdxA; ferredoxin III protein; K05524 ferredoxin
SCNpilot_expt_1000_bf_scaffold_3265_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13111..13680
DNA (570bp) protein (190aa)
Transcriptional regulator, CarD family protein {ECO:0000313|EMBL:EYR78952.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional factor regulator, CarD family; K07736 CarD family transcriptional regulator rbh
Transcriptional factor regulator, CarD family n=2 Tax=Rhizobium fredii RepID=G9A2L2_RHIFH rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14011..14871
DNA (861bp) protein (287aa)
RNA polymerase sigma factor RpoH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS77_9RHIZ rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpoH2; RpoH2 heat shock sigma factor; K03089 RNA polymerase sigma-32 factor rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14875..15633)
DNA (759bp) protein (253aa)
Putative intracellular septation protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ3_9RHIZ rbh
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ispZ; intracellular septation protein; K06190 intracellular septation protein rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15630..15923)
DNA (294bp) protein (98aa)
Signal recognition particle receptor FtsY n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3T6_9RHIZ
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsY; signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
SCNpilot_expt_1000_bf_scaffold_3265_curated_16
RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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16053..16337
DNA (285bp) protein (95aa)
Tax=RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated
SCNpilot_expt_1000_bf_scaffold_3265_curated_17
unknown

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16844..17191
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3265_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17188..18477)
DNA (1290bp) protein (430aa)
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D884_9RHIZ rbh
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB {ECO:0000313|EMBL:EYR79676.1}; EC=2.-.-.- {ECO:0000313|EMBL:EYR79676.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18474..19373)
DNA (900bp) protein (300aa)
Diaminopimelate epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF8_9RHIZ rbh
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dapF; diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20141..21286
DNA (1146bp) protein (382aa)
Signal recognition particle protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ7_9RHIZ rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 rbh
SCNpilot_expt_1000_bf_scaffold_3265_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21392..21598
DNA (207bp) protein (69aa)
Chorismate mutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3U2_9RHIZ
Chorismate mutase {ECO:0000313|EMBL:EYR79672.1}; EC=5.4.99.5 {ECO:0000313|EMBL:EYR79672.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tyrA; chorismate mutase (EC:5.4.99.5); K04092 chorismate mutase [EC:5.4.99.5]
SCNpilot_expt_1000_bf_scaffold_3265_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22101..22235
DNA (135bp) protein (45aa)
Ribosome maturation factor RimM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZG3_9RHIZ
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
Displaying 22 items

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