ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3265_curated_19

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(18474..19373)

Top 3 Functional Annotations

Value Algorithm Source
Diaminopimelate epimerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.3
  • Coverage: 299.0
  • Bit_score: 557
  • Evalue 8.10e-156
  • rbh
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.3
  • Coverage: 299.0
  • Bit_score: 557
  • Evalue 1.10e-155
dapF; diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] similarity KEGG
DB: KEGG
  • Identity: 82.9
  • Coverage: 299.0
  • Bit_score: 510
  • Evalue 3.60e-142
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
ATGGCCGCTGAAGTGCAATTCGCCCGTATGAACGGACTGGGAAACATGATCCTCGTCGTGGACATGCGCGGCCGCGCCGATGCCGTGACGCCGGCGGCGGCCATCGCGCTCAATGCCGATCCCGCCACCCGCTTCGACCAGATCATGGCGGTCCACGATCCGAAGGTCGACGGCACGGACGCCTTCATCGACATCATCAACTGCGACGGGTCGAGGGCCCAAGCCTGCGGCAACGGCACGCGCTGCGTCGTGCAGGCGCTCGCCGCCGAGACGGGCCGCAAGGCCTTTACCTTCCAGACGGTCGCCGGCATCCTCAACGCCAGCGAGAACGGGGACGGTACGATCTCCGTCGACATGGGCAAGCCGGTCTTCGAATGGAACCGCATTCCGCTCGCCGAGGAATTCTTCGACACCAGCCGCATCGAATTGCAGATCGGGCCGATCGACGCGCCGATCCTGCATTCGCCCGCCGTCATGTCGATGGGCAATCCGCACGCGGTCTTCTGGGTCGACCGCGATCCGATGAGCTTCGATCTCGACCGCTTCGGCCCGCTGCTTGAAAACCATCCGATGTTCCCGGAAAGGGCCAATATCACGCTGGCGCATGTGACGTCCCCGTCCTCGATGACGACGCGTACCTGGGAGCGCGGCGCGGGCCTGACGCTCGCCTGCGGCTCGGCCGCCTGCTCGGCCGGCGTTTCCGGGGCGCGCACCGGCCGGACGGGCCGAAAGGTTGCCGTCACGGTCGCCAGCAGCCCGAACCGCGGCACGCTGACCATCGAGTGGCGCGAGGACGACCATGTCGTTATGACGGGGCCTGCCGAATGGGAATGGTCGGGCACGCTCGATCCCTCGACCGGCGCCTTCCGCCGCGACGAGACCGGGGCGGCCGCCCTTTGA
PROTEIN sequence
Length: 300
MAAEVQFARMNGLGNMILVVDMRGRADAVTPAAAIALNADPATRFDQIMAVHDPKVDGTDAFIDIINCDGSRAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNASENGDGTISVDMGKPVFEWNRIPLAEEFFDTSRIELQIGPIDAPILHSPAVMSMGNPHAVFWVDRDPMSFDLDRFGPLLENHPMFPERANITLAHVTSPSSMTTRTWERGAGLTLACGSAACSAGVSGARTGRTGRKVAVTVASSPNRGTLTIEWREDDHVVMTGPAEWEWSGTLDPSTGAFRRDETGAAAL*