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SCNpilot_expt_1000_bf_scaffold_3265_curated_20

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 20141..21286

Top 3 Functional Annotations

Value Algorithm Source
Signal recognition particle protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZQ7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.1
  • Coverage: 387.0
  • Bit_score: 712
  • Evalue 2.50e-202
  • rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.1
  • Coverage: 387.0
  • Bit_score: 712
  • Evalue 3.50e-202
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 385.0
  • Bit_score: 696
  • Evalue 5.80e-198
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1146
ATGGCCTCGCTCGACACGCGCCGCCCGGCCGCGCAGGAGCAGCTTCGCCAGCTCGGCGTGCAGACGGGGATCGACACGCTGCCGGTCATCGCCGGCCAGTCGCCGACCGATATCGCCGCCCGCGCCGTGCAGGCCGCCAAGCTCGGCGGCCATGACGTCGTCATCCTCGACACCGCCGGCCGCACCCATATCGACGAACCGCTGATGATCGAGATGGCGGAGATCAAGCGGAAGTCCGATCCGCACGAGATCCTGCTCGTCGCCGACGCGCTGACCGGCCAGGACGCCGTCAACCTCGCCCGCAACTTCGACGATCGCGTCGGCATCACCGGCCTCGTGCTCACCCGCATGGACGGCGACGGCCGCGGCGGTGCGGCCCTTTCCATGCGCGCCGTCACCGGCAAGCCGATCAAGCTGATCGGCGTCGGCGAGAAGATGGGCGAGCTGGAGGAGTTCCATCCCCGCCGCGTCGCCGACCGCATCCTCGGCATGGGCGACATCGTCTCGCTCGTCGAGAAGGCGGCGGAGAACATCGACGCCGAGAAGGCGGCCGCCATGGCCGCCAAGATGGCCAAGGGCAAGTTCGATCTCAACGACCTCGCCGACCAGCTTCGCCAGATGCAGAAGATGGGCGGCATGGGCGGCATCATGGGGATGATGCCCGGCATGGCCGGCATGAAGGACAAGATGTCCGCTGCCGGCCTCGACGACAAGCTCTTCGGCCGCCAGATCGCCATCATCAACTCGATGACCAAGGCCGAGCGCGCCAATCCGGACATGCTCAAGCATTCCCGCAAGAAGCGCATCGCCGCCGGCTCCGGCACCGATGCGGCCGACATCAACAAGCTTCTGAAGATGCACCGCCAGATGGCGGACATGATGAAGATGATGGGCGGCAAGAAGGGCGGCATGATGAAGCAGATGATGGGCGGCCTTGCCGGCAAGATGGGCCTCGGCGGCCTCGGCGGCGGCATGCCCGATCTTTCCAGCATGGACCCCAAGCAGCTCGAAGCGCTCGCCAAGCAGGCGGAAGCGGCCGGCATCAAGCCGGGCGGCCTGCCGGGCCTCGGCGGCAGCGGCGGTCTTCGCCTGCCCGGTCTCGGCGGCGGCCTTCCGGGCCTGCCCGGCCTGCCGAAGAAGAAGTGA
PROTEIN sequence
Length: 382
MASLDTRRPAAQEQLRQLGVQTGIDTLPVIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMIEMAEIKRKSDPHEILLVADALTGQDAVNLARNFDDRVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMGELEEFHPRRVADRILGMGDIVSLVEKAAENIDAEKAAAMAAKMAKGKFDLNDLADQLRQMQKMGGMGGIMGMMPGMAGMKDKMSAAGLDDKLFGRQIAIINSMTKAERANPDMLKHSRKKRIAAGSGTDAADINKLLKMHRQMADMMKMMGGKKGGMMKQMMGGLAGKMGLGGLGGGMPDLSSMDPKQLEALAKQAEAAGIKPGGLPGLGGSGGLRLPGLGGGLPGLPGLPKKK*