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SCNpilot_expt_1000_bf_scaffold_3265_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 7474..8055

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.3
  • Coverage: 191.0
  • Bit_score: 378
  • Evalue 4.70e-102
2'-5' RNA ligase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q822_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 84.5
  • Coverage: 181.0
  • Bit_score: 324
  • Evalue 9.70e-86
  • rbh
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] similarity KEGG
DB: KEGG
  • Identity: 84.4
  • Coverage: 179.0
  • Bit_score: 323
  • Evalue 4.00e-86
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGCCGAGACTTTTCGTCGCCCTCGAAGTGCCGCGCAACGCGGCGATGAGCCTCTCGCTCCTGAGAGGCGGACTTCCCGGAGCCCGCTGGATCGATGTCGAGAATTTCCACATCACCCTGCGCTTCATCGGTGACATCGACGGCCGCACTGCCGACGAGGTGGTCGACCGGCTCGACCGCATCGAGCGCCCGGAATTCCAGCTCGCGCTCTCCGGCCTCGGCTCCTTCGGCTCGAAGAAACCGCATTCGGTCTTCGCCGGGGTCACGCAGGCGCCGGAAATGCACGCGCTGCAGGGCGAGATCGAGCGCATCTGCCAGCGCCTCGGCCTTCCCGCCGATCCGCGCAAGTTCACCCCGCACGTTACCCTCGCCCGCCTGCGCAACGCCCGCACCGAGGATGTCGCCCACTACCTCTCCGGCCGCGGCAACTTTCACACCGCCCCCTTCACCGTGAACCGCTTCGTGCTGATGTCCTCGAAGGAATCGGTCGGCGGCGGGCCGTATCTGACGGAAGAAGTGTTTCCGCTTTATGAGACGGGCGGCGGCTGGGACGGGGCGGATTTGCACGACCATCCGGCGTGA
PROTEIN sequence
Length: 194
MPRLFVALEVPRNAAMSLSLLRGGLPGARWIDVENFHITLRFIGDIDGRTADEVVDRLDRIERPEFQLALSGLGSFGSKKPHSVFAGVTQAPEMHALQGEIERICQRLGLPADPRKFTPHVTLARLRNARTEDVAHYLSGRGNFHTAPFTVNRFVLMSSKESVGGGPYLTEEVFPLYETGGGWDGADLHDHPA*