ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3265_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3425..5977)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP12_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.4
  • Coverage: 850.0
  • Bit_score: 1483
  • Evalue 0.0
  • rbh
ABC transporter permease {ECO:0000313|EMBL:EYR78960.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.4
  • Coverage: 850.0
  • Bit_score: 1483
  • Evalue 0.0
putative ABC transporter, permease protein (involved in lysophospholipase L1 biosynthesis); K02004 putative ABC transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 77.2
  • Coverage: 850.0
  • Bit_score: 1284
  • Evalue 0.0
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2553
ATGAGGGTGGGTGTGGTCCTACGCCAGGTTCCGCTCGCTCTTCGCCTTGCGCTGCGCGAGATGCGCGGCGGCCTGAAGGGTTTCTACATCTTCCTCGCCTGCATCGCGCTCGGCACGGCGGCGATCGCCGGCGTCAACTCGGTGTCGAGCGCTATAACCGAGGCGATCGCCTCGCAGGGCCAGACGCTGCTGGCCGGCGACGTGCGCTTCGAGTTGCGCAACCGTTTCGCGACGCCCGAGGAGCTGAAATATTTCGAGGGCCTCGGTGACGTCTCGCTGTCGACGGGGCTGCGCTCCATGGTGCGCCTGCCCGACGGTTCCGACCAGACGCTGGTGGAGGCCAAGGGCGTCGACGGCGCCTATCCGCTCTACGGCACGCTGGAGACCGAGCCGCAAAAGCCGGCCGCGGCACTCTTCGCCAGGGAGGGCGATGCCTATGGCGCCGTCGTCGCGCCGCTGCTGCTCGACCGGCTCGGCGTTGCCGTCGGCGACGAAATCCTGCTCGGTACGGCGAAGATCCGGATAGCGGCGACGCTGGCGCGCGAGCCGGATGCCGTTTCGGAGGGTTTCGGTTTCGCCCCGCGCCTGCTTCTGTCGGAAGAGGCCCTGAAAGCGAGCGGCCTCGTGCAGACGGGCAGCCTCGTCGAAAATGCCTACCGCATCCGTATATCCGATCCCGGCATCCTGCCCGCGACGATCCGGGCGGATGCGAACAAGGCCTTCCCCGCCGCCGGCTGGTCGATCCGCACCGCCGACAGCGCGGCGCCGGCGCTTACCGCCAACATCACCCGCTTCTCGCAGTTCCTGACACTGGTCGGCCTGACGGCGCTGATCGTCGGCGGTGTGGGCGTTGCCAATGCCGTGCGGGCCTATCTCGATTCCAAGCGCTCCGTAATCGCCACCTTCAAGTGCCTCGGGGCGCCCGCCTCGCTGGTCGCCCTCGTCTATCTCGCGCAGATCGCGCTGATCGCGGCGGTCGGCATCGCCATCGGGCTCGCCTTCGGCGCGCTGATGCCCGTCGTGGCGATGCGGTTCCTGGACGGTGTCCTGCCGGTGCCGGCCGAGGCGGCGGTCTATCCTTCCGCCCTGCTGCTCGCCGCCGTCTTCGGCCTGCTGACCGCGCTCGCCTTCGCCGTCATGCCGCTCGGCCATGCCCGCGAGGTGCCGGCGACGGCGCTCTTCCGCGAGCAGGGCTTCGAGGCGGGCCGCCTGCCGGGCTGGCCCTATGTGCTGGGTGCGGCGGTGTTCCTCGCGGCGCTCGCGGGACTTGCCGTCTACACGGCCTATGACCGCTATATCGCGCTCGTCTTCCTCGGGGCCATCGCCTTCGCCTTCGTCGTGCTGCGCGCCGTCGCCATGCTGATCACGGCGCTGGCGAAGCGCAGCCCGCGGGTCAATTCGCCGGCGCTCAGGCTCGCCGTCGGCAATATCCACCGGCCGGGGGCCTTGACCTCCTCCGTCGTGCTGTCGCTCGGCCTCGGCCTTGCGCTCCTCGTCACGCTGACGCTGATCGACGGGAACCTGCGCCGCGAACTGACCGGCAACCTGCCGGAGCGGGCGCCGAACTTCTTCTTCGTCGACATCCAGGGCAGCGAGCTCGACGGGTTCCGCGACGTGCTGAAGGCGAACATGCCGGAGGGCAAGATCATCGAGGTGCCGATGCTGCGCGGCCGGGTGATGGAGCTCAACGGCGTGGACGTGGCGAAGGTCGCGGTGCCGCCGGAAGGCCAGTGGGTGCTGCGCGGCGACCGCGGCATCACCTATGCCAGGAACGTGCCGGAAAATTCGACGCTTTCGGAAGGTGCGTGGTGGCCGGAGGACTATTCCGGCGAGCCGCTCGTCTCCTTCTCGGCGGAGGAAGGCCGCGAGCTCGGCCTCAAGATCGGCGACACGGTGACCGTCAACGTGCTTGGCCGCAACATCACCGCGCGCATCGCCAATTTCCGCAATGTCGAGTGGGAATCGCTGTCGATCAACTTCGTCATGGTGTTCTCGCCGAACACCTTTGCCGGCGCGCCGCACGCCTGGCTCGCCACGGTCATCGACCCGTCCGCGACGGCGCCGCAGGAGGCGGCGACGCTCAAGGCCATCACCAATGCCTATCCGACCGTCACCAGCGTGCGCGTCAAGGATGCGCTCGACGTCATCAACGAACTCGTCGGCCAGCTCGCCACCGCGATCCGCGCGGCCGCGGCGGTGGCGCTCGTCGCCTCGATCCTCGTGCTTGCCGGGGCGCTCGCCGCCGGCAACCGGGCGCGCGTGCACGACGCTGTCGTGCTGAAGACGCTCGGCGCGACGCGGACGACGCTGATCCGGGCCTTCAGCTACGAATACCTGATGCTGGGGCTGGCGACCGCGGTCTTCGCGCTCTTTGCCGGGGGCATGGCCGCCTGGTTCGTGGTGAGCCGCATCATGAAGCTGCCGTCGAGCTTCCTGCCCGACGTCGCCGTCATGACCGTCGCGACCGCGCTCGTCATGACCGTCGGCATCGGCCTTGCCGGCACCTGGCGCATCCTGGGGCAGAAGGCCGCGCCCGTGCTGCGCGAGCTTTGA
PROTEIN sequence
Length: 851
MRVGVVLRQVPLALRLALREMRGGLKGFYIFLACIALGTAAIAGVNSVSSAITEAIASQGQTLLAGDVRFELRNRFATPEELKYFEGLGDVSLSTGLRSMVRLPDGSDQTLVEAKGVDGAYPLYGTLETEPQKPAAALFAREGDAYGAVVAPLLLDRLGVAVGDEILLGTAKIRIAATLAREPDAVSEGFGFAPRLLLSEEALKASGLVQTGSLVENAYRIRISDPGILPATIRADANKAFPAAGWSIRTADSAAPALTANITRFSQFLTLVGLTALIVGGVGVANAVRAYLDSKRSVIATFKCLGAPASLVALVYLAQIALIAAVGIAIGLAFGALMPVVAMRFLDGVLPVPAEAAVYPSALLLAAVFGLLTALAFAVMPLGHAREVPATALFREQGFEAGRLPGWPYVLGAAVFLAALAGLAVYTAYDRYIALVFLGAIAFAFVVLRAVAMLITALAKRSPRVNSPALRLAVGNIHRPGALTSSVVLSLGLGLALLVTLTLIDGNLRRELTGNLPERAPNFFFVDIQGSELDGFRDVLKANMPEGKIIEVPMLRGRVMELNGVDVAKVAVPPEGQWVLRGDRGITYARNVPENSTLSEGAWWPEDYSGEPLVSFSAEEGRELGLKIGDTVTVNVLGRNITARIANFRNVEWESLSINFVMVFSPNTFAGAPHAWLATVIDPSATAPQEAATLKAITNAYPTVTSVRVKDALDVINELVGQLATAIRAAAAVALVASILVLAGALAAGNRARVHDAVVLKTLGATRTTLIRAFSYEYLMLGLATAVFALFAGGMAAWFVVSRIMKLPSSFLPDVAVMTVATALVMTVGIGLAGTWRILGQKAAPVLREL*